Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17d16
(367 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0522 - 3834551-3835451,3835992-3836572 28 2.6
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 28 2.6
02_02_0200 - 7718760-7718816,7718910-7719011,7719643-7719726,771... 27 3.4
09_06_0244 + 21822811-21823246,21823337-21823468,21823949-218240... 27 4.5
07_01_0576 + 4280671-4280730,4280812-4280865,4280955-4281017,428... 27 4.5
11_01_0370 + 2814888-2814979,2815450-2815620,2815753-2815834,281... 27 6.0
03_05_0172 - 21488504-21488752,21488862-21489611,21489691-214897... 27 6.0
12_01_0095 + 745244-745590,745697-745706 26 7.9
11_08_0089 - 28288129-28288832,28290702-28290831,28291563-282918... 26 7.9
01_05_0772 + 25056973-25057285,25057678-25058006,25058113-250583... 26 7.9
>01_01_0522 - 3834551-3835451,3835992-3836572
Length = 493
Score = 27.9 bits (59), Expect = 2.6
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +1
Query: 154 PCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCKIYSKELGETPSAVCKEPL 327
P IQP L C H+ HA +CA A G+G ++ P V EP+
Sbjct: 271 PTIQPVLSCIFRGVHKCHHAKECAGGGAAAGNNGDGDGNDEEAETETAEPEVVVVEPV 328
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 172 LVCPKNTEHRARHAGKCACCP 234
L C K++ R HAGKC CP
Sbjct: 313 LQCGKHSCERGCHAGKCGGCP 333
>02_02_0200 -
7718760-7718816,7718910-7719011,7719643-7719726,
7719821-7719916,7720016-7720066,7720162-7720302,
7720717-7720773,7720864-7720938,7721033-7721305,
7721382-7721441,7721531-7721620,7722519-7722638
Length = 401
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 157 MDFFHSSLYHIPKHRTLLTQRMP 89
M+F SLY + KH + + QRMP
Sbjct: 149 MEFVPESLYRVLKHYSNMNQRMP 171
>09_06_0244 +
21822811-21823246,21823337-21823468,21823949-21824037,
21824135-21824224,21825033-21825603,21826097-21826734,
21826978-21827098,21827223-21827337,21828234-21829723,
21829830-21829901,21830151-21830196,21830413-21830515,
21830591-21830674,21831035-21831475,21831651-21831746,
21831896-21832045,21832131-21832274,21832414-21832527,
21832621-21832803,21832901-21832945,21833058-21833192
Length = 1764
Score = 27.1 bits (57), Expect = 4.5
Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Frame = +1
Query: 172 LVCPKNTEHRARHAGKCACCPACVTLLGEGAT--CKIYSKELGETPSAVCKEPLKCIKRV 345
L P NTE GKC C A L G G T C + T + ++ R
Sbjct: 746 LDAPNNTECSPYRDGKCCCSLAPKCLAGYGFTKHCVARIDQTDHTVQKSKDDGMQAAARC 805
Query: 346 CT 351
CT
Sbjct: 806 CT 807
>07_01_0576 +
4280671-4280730,4280812-4280865,4280955-4281017,
4281100-4281149,4281255-4281330,4281663-4281863,
4282414-4282501,4282606-4282691,4282773-4282859,
4283289-4283333,4283547-4283567
Length = 276
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 28 TITRNVFKNFKMKTLIFIMLVACVASAAY 114
TI +N+FKN+ + + I + + C AY
Sbjct: 138 TINKNLFKNWPLMSSIILYCIICFDDMAY 166
>11_01_0370 +
2814888-2814979,2815450-2815620,2815753-2815834,
2816275-2816316,2816397-2816456,2816817-2816913,
2817382-2819024,2819155-2819256,2819369-2819509,
2819625-2819750,2819935-2820096
Length = 905
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -1
Query: 244 LHKRDNKHTFQRVWRDAQCS*GKQVVAVCMDFFHSSLYHIPKHRTLL 104
++ + + Q+V+RD Q Q +A+ D SSL + K L+
Sbjct: 259 VYSKPDVRFIQQVYRDGQLGSNAQSIAMSSDLISSSLRSVQKQPLLM 305
>03_05_0172 -
21488504-21488752,21488862-21489611,21489691-21489789,
21489862-21490776,21490847-21490976,21491438-21491583,
21491801-21491896,21492521-21492613,21492702-21492755,
21492897-21492956,21493046-21493171,21493283-21493366,
21493444-21493587,21493667-21493963
Length = 1080
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 308 AEGVSPSSFE*ILQVAPSPSKVTQAGQQAHFPA 210
A G SP S + + A PSK G+QA PA
Sbjct: 60 APGASPRSSKPVPTSAAPPSKAAAEGEQASAPA 92
>12_01_0095 + 745244-745590,745697-745706
Length = 118
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 52 NFKMKTLIFIMLVACVASAAYGALVCGTDYCEKNPCI 162
NFK + +M + A A A+ CG PCI
Sbjct: 5 NFKAVAAVMVMAMVVAAPGASAAITCGQVGSAIAPCI 41
>11_08_0089 -
28288129-28288832,28290702-28290831,28291563-28291856,
28292000-28292098,28292199-28292285,28292524-28292805
Length = 531
Score = 26.2 bits (55), Expect = 7.9
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Frame = +1
Query: 91 ACVASAAYGALV-CGTDYC--EKNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEG 261
A V+ AA G V CGT C + N C CP E R R C AC + G+
Sbjct: 420 APVSMAAVGGGVGCGTAACGADVNVC------CPSALEVRDREGRVAGCRSACRAMGGDR 473
Query: 262 ATC 270
C
Sbjct: 474 YCC 476
>01_05_0772 +
25056973-25057285,25057678-25058006,25058113-25058360,
25058481-25059396
Length = 601
Score = 26.2 bits (55), Expect = 7.9
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Frame = -3
Query: 251 SKVTQAGQQAHFP------ACLARCSVFLGQTSGGC--MHGFFSQ*SVPHTKAPYAADAT 96
SK T+ QQA FP C+ + L C + F Q S +T APYA+
Sbjct: 529 SKATKTNQQAFFPFGWGPRICIGQNFAMLEAKMALCVILQNFEFQLSPSYTHAPYASVTL 588
Query: 95 H 93
H
Sbjct: 589 H 589
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,591,244
Number of Sequences: 37544
Number of extensions: 212681
Number of successful extensions: 632
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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