Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17d15
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    28   0.99 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    28   0.99 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   1.3  
SPCC417.02 |dad5|hsk3, hos3|DASH complex subunit Dad5|Schizosacc...    26   4.0  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    26   4.0  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    25   7.0  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    25   7.0  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.2  
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...    25   9.2  

>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 1   KNKQKNNPKFSFLYGGE-YFNYYQYKVT 81
           +  ++ N KF+FL+  + Y  YYQ+K+T
Sbjct: 64  RQNEQANTKFAFLHANDPYHPYYQHKLT 91


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 192 DACSAGSSGLDGGGTCTSAVACSQLCPASPSSAPTRNRQHH 314
           D+  A S    G G   S     Q+ PA P+ APT   +HH
Sbjct: 703 DSIIADSMSPMGTGAVNSPAIKPQVTPAPPTPAPTPAVKHH 743


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 22/92 (23%), Positives = 43/92 (46%)
 Frame = +1

Query: 253 LAVNSAPPPLPQHPQEIDSITTQINVLKEQITQSENNLNAQHAVLIQQQQVKINELVSKA 432
           L +  +   L +  +++DS+   I  LKE + +SE  L          ++V I+ L  K 
Sbjct: 668 LKLEESNKSLIKKQEDVDSLEKNIQTLKEDLRKSEEALRFSKLEAKNLREV-IDNL--KG 724

Query: 433 QMESLQIMADENNINLSELDNILQPIIDSCTK 528
           + E+L+   ++ + +LS+  N    +    TK
Sbjct: 725 KHETLEAQRNDLHSSLSDAKNTNAILSSELTK 756


>SPCC417.02 |dad5|hsk3, hos3|DASH complex subunit
           Dad5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 94

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 15/68 (22%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +1

Query: 262 NSAPPPLPQHPQEIDSITTQINVLKEQITQSENNLNAQHAVLIQQQQV-KINELVSKAQM 438
           +S+P P      +++ +  Q++ L+  ++  EN+L   H   IQ + + ++  L +   M
Sbjct: 14  SSSPSPSQMKSFQMNRLVDQLSKLQSNMSHLENHL---HVTAIQAEAIRRLGALQASLLM 70

Query: 439 ESLQIMAD 462
            S ++M++
Sbjct: 71  ASGRVMSE 78


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 262 NSAPPPLPQHPQEIDSITTQ 321
           +S+PPP+P  P E  S  TQ
Sbjct: 189 SSSPPPIPSIPHETTSSDTQ 208


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 236 LYFSSGLQSTLPRLPFLSTHKKSTASQH 319
           +YF+ G  S  P LP+ S    S + +H
Sbjct: 456 IYFADGNWSDFPSLPYASHRASSVSIKH 483


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 78 HFVLIVVEVLAAIQETKFWVI 16
          HF L  +E LA I+  +FW+I
Sbjct: 14 HFHLPELETLAKIENVEFWLI 34


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = -3

Query: 220 RPLDPAEQASRWPVGALHIACSVPYRPRRERMPPAHRPFALELLVLSSLCIDSS*STRRH 41
           +PL P+  +S  P+   HIA       R   + P H P        SS  +D S    +H
Sbjct: 55  QPLSPSNISSAAPLDETHIATKASASLRNNNVSP-HIPSPSSFSSSSSSDLDKSMLDEKH 113


>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 250 WLAVNSAPPPLPQHPQEID 306
           WLA+    P +PQ+P   D
Sbjct: 129 WLAIEGVQPAIPQNPTPSD 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.126    0.351 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,017,633
Number of Sequences: 5004
Number of extensions: 37844
Number of successful extensions: 92
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)