Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17d10
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0155 + 13274537-13274741,13274827-13274864,13274909-132749...    40   8e-04
06_01_0830 + 6261629-6261704,6261829-6261974,6262086-6262310,626...    27   8.5  
01_06_0588 - 30440817-30441203,30441323-30441463,30441598-30442404     27   8.5  

>01_03_0155 +
           13274537-13274741,13274827-13274864,13274909-13274968,
           13275117-13275176,13277072-13277146,13277233-13277346
          Length = 183

 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 21/69 (30%)
 Frame = +2

Query: 239 TTSGRKR-LFSKELRCMMYGFGDDQN--------------------PYTESVDFLEDLVI 355
           TT  RKR +F K+L+ MMYGFGDD N                    P  E+V  +ED+V+
Sbjct: 56  TTLKRKRGVFQKDLQHMMYGFGDDPNARNCLGIGCNLCTLCCGTLEPLPETVALVEDIVV 115

Query: 356 EFITETTHR 382
           E++T+  H+
Sbjct: 116 EYVTDLVHK 124


>06_01_0830 +
           6261629-6261704,6261829-6261974,6262086-6262310,
           6262910-6263122,6264007-6264300
          Length = 317

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 257 RLFSKELRCMMYGFGDDQNPYTESVDFLEDLVIEFITE 370
           R F K +R  + G G D+N  T  +    ++ ++ ITE
Sbjct: 246 RYFEKVIRLAIAGMGTDENSLTRIITTRAEVDLKLITE 283


>01_06_0588 - 30440817-30441203,30441323-30441463,30441598-30442404
          Length = 444

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 106 KISTNKRFKFYKKTLVNQYHGHSH 177
           + S + RF F+K  LVN +H  SH
Sbjct: 406 RASLDARFLFFKGALVNNHHDVSH 429


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,441,356
Number of Sequences: 37544
Number of extensions: 152583
Number of successful extensions: 216
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)