Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17d10
(500 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X84003-1|CAA58827.1| 124|Homo sapiens PolII transcription facto... 93 5e-19
BX679664-8|CAH71330.1| 124|Homo sapiens TAF13 RNA polymerase II... 93 5e-19
BC121181-1|AAI21182.1| 124|Homo sapiens TAF13 RNA polymerase II... 93 5e-19
BC121180-1|AAI21181.1| 124|Homo sapiens TAF13 RNA polymerase II... 93 5e-19
BC035816-1|AAH35816.1| 370|Homo sapiens SUPT3H protein protein. 35 0.14
AL360272-3|CAH70848.1| 317|Homo sapiens suppressor of Ty 3 homo... 35 0.14
AL161905-3|CAI15666.1| 317|Homo sapiens suppressor of Ty 3 homo... 35 0.14
AL138880-4|CAI14627.1| 317|Homo sapiens suppressor of Ty 3 homo... 35 0.14
AL096865-3|CAI19927.1| 317|Homo sapiens suppressor of Ty 3 homo... 35 0.14
AF073930-1|AAC36098.1| 317|Homo sapiens histone acetylase compl... 35 0.14
AF069734-1|AAC39904.1| 317|Homo sapiens SPT3-like protein protein. 35 0.14
AF064804-1|AAC70014.1| 399|Homo sapiens transcription factor SU... 31 1.7
>X84003-1|CAA58827.1| 124|Homo sapiens PolII transcription factor
TFIID protein.
Length = 124
Score = 93.1 bits (221), Expect = 5e-19
Identities = 44/53 (83%), Positives = 45/53 (84%), Gaps = 3/53 (5%)
Frame = +2
Query: 233 GGTTSG---RKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLVIEFITETTHR 382
GG G RKRLFSKELRCMMYGFGDDQNPYTESVD LEDLVIEFITE TH+
Sbjct: 19 GGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHK 71
>BX679664-8|CAH71330.1| 124|Homo sapiens TAF13 RNA polymerase II,
TATA box binding protein5 (PGRM) (PGM5) protein.
Length = 124
Score = 93.1 bits (221), Expect = 5e-19
Identities = 44/53 (83%), Positives = 45/53 (84%), Gaps = 3/53 (5%)
Frame = +2
Query: 233 GGTTSG---RKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLVIEFITETTHR 382
GG G RKRLFSKELRCMMYGFGDDQNPYTESVD LEDLVIEFITE TH+
Sbjct: 19 GGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHK 71
>BC121181-1|AAI21182.1| 124|Homo sapiens TAF13 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 18kD
protein.
Length = 124
Score = 93.1 bits (221), Expect = 5e-19
Identities = 44/53 (83%), Positives = 45/53 (84%), Gaps = 3/53 (5%)
Frame = +2
Query: 233 GGTTSG---RKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLVIEFITETTHR 382
GG G RKRLFSKELRCMMYGFGDDQNPYTESVD LEDLVIEFITE TH+
Sbjct: 19 GGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHK 71
>BC121180-1|AAI21181.1| 124|Homo sapiens TAF13 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 18kD
protein.
Length = 124
Score = 93.1 bits (221), Expect = 5e-19
Identities = 44/53 (83%), Positives = 45/53 (84%), Gaps = 3/53 (5%)
Frame = +2
Query: 233 GGTTSG---RKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLVIEFITETTHR 382
GG G RKRLFSKELRCMMYGFGDDQNPYTESVD LEDLVIEFITE TH+
Sbjct: 19 GGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHK 71
>BC035816-1|AAH35816.1| 370|Homo sapiens SUPT3H protein protein.
Length = 370
Score = 35.1 bits (77), Expect = 0.14
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2
Query: 236 GTTSGRKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLV 352
G ++G+ F+ EL+ MMY GD + P E+ +ED+V
Sbjct: 70 GRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVV 108
>AL360272-3|CAH70848.1| 317|Homo sapiens suppressor of Ty 3 homolog
(S. cerevisiae) protein.
Length = 317
Score = 35.1 bits (77), Expect = 0.14
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2
Query: 236 GTTSGRKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLV 352
G ++G+ F+ EL+ MMY GD + P E+ +ED+V
Sbjct: 17 GRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVV 55
>AL161905-3|CAI15666.1| 317|Homo sapiens suppressor of Ty 3 homolog
(S. cerevisiae) protein.
Length = 317
Score = 35.1 bits (77), Expect = 0.14
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2
Query: 236 GTTSGRKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLV 352
G ++G+ F+ EL+ MMY GD + P E+ +ED+V
Sbjct: 17 GRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVV 55
>AL138880-4|CAI14627.1| 317|Homo sapiens suppressor of Ty 3 homolog
(S. cerevisiae) protein.
Length = 317
Score = 35.1 bits (77), Expect = 0.14
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2
Query: 236 GTTSGRKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLV 352
G ++G+ F+ EL+ MMY GD + P E+ +ED+V
Sbjct: 17 GRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVV 55
>AL096865-3|CAI19927.1| 317|Homo sapiens suppressor of Ty 3 homolog
(S. cerevisiae) protein.
Length = 317
Score = 35.1 bits (77), Expect = 0.14
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2
Query: 236 GTTSGRKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLV 352
G ++G+ F+ EL+ MMY GD + P E+ +ED+V
Sbjct: 17 GRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVV 55
>AF073930-1|AAC36098.1| 317|Homo sapiens histone acetylase complex
subunit protein.
Length = 317
Score = 35.1 bits (77), Expect = 0.14
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2
Query: 236 GTTSGRKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLV 352
G ++G+ F+ EL+ MMY GD + P E+ +ED+V
Sbjct: 17 GRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVV 55
>AF069734-1|AAC39904.1| 317|Homo sapiens SPT3-like protein protein.
Length = 317
Score = 35.1 bits (77), Expect = 0.14
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2
Query: 236 GTTSGRKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLV 352
G ++G+ F+ EL+ MMY GD + P E+ +ED+V
Sbjct: 17 GRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVV 55
>AF064804-1|AAC70014.1| 399|Homo sapiens transcription factor
SUPT3H protein.
Length = 399
Score = 31.5 bits (68), Expect = 1.7
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +2
Query: 236 GTTSGRKRLFSKELRCMMYGFGDDQNPYTESVDFLEDLV 352
G ++G+ F+ EL+ MMY GD ++ + + +ED+V
Sbjct: 99 GRSTGKSISFATELQSMMYSLGDARSLFMRTAVLVEDVV 137
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,911,838
Number of Sequences: 237096
Number of extensions: 920396
Number of successful extensions: 1227
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4593178062
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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