Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17d09
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    33   0.036
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...    27   1.3  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   5.4  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   7.2  

>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 32.7 bits (71), Expect = 0.036
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +2

Query: 299 APTIERLNQYLNINIYPYGKAKTIEKNGKYEFICQHGPEECYGNKLHACAIDVIGN 466
           +PT+ R N  ++++ YP  K +  E++    F  +   E+   NK    +I+V+ N
Sbjct: 371 SPTVSRANSVIDVDAYPPEKRRRKEQSKLLSFFAKQKEEKEETNKTEDVSIEVLDN 426


>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -2

Query: 195 KYVSDSNGLDRV*SISMKFETIYSSCPLTKTIKYKATNIVLDIVFIL 55
           KY+++  G + V  ++   E + ++C L +   YKA  I  D   IL
Sbjct: 98  KYITEYFGYEMVIPMNTGAEAVETACKLARLWGYKAKKIPTDEAIIL 144


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 9/41 (21%)
 Frame = -3

Query: 323  DSIFQLLVLISRSRTLYSQD---------TRIRNRPLHLLF 228
            DSI ++   ISRS ++ + D          RIRNRP+H+L+
Sbjct: 2816 DSISKVTGTISRSLSVITLDPKFQSRRRAARIRNRPVHILY 2856


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 181 FQRARSRLINFYEIRDNIFFLSSD*NDQIQSHEYCVGHCI-YISKXL 44
           FQ  RS   N  +       L+S  +  I SH+YC+  C+ Y+S  L
Sbjct: 730 FQLERSSAFNDEQFNYVFNTLTSISDQCISSHKYCMDACLSYLSGNL 776


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,007,203
Number of Sequences: 5004
Number of extensions: 38967
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)