Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17d07
(506 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 75 8e-15
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 28 0.70
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo... 28 0.92
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 27 1.2
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 2.1
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 2.1
SPAC1B3.07c |vps28||ESCRT I complex subunit Vps28|Schizosaccharo... 26 3.7
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 25 4.9
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 25 4.9
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 25 4.9
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 25 6.5
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 25 6.5
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 6.5
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe... 25 6.5
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 74.5 bits (175), Expect = 8e-15
Identities = 33/65 (50%), Positives = 42/65 (64%)
Frame = +3
Query: 90 ELASHSAGGKVLFATDDFFATCENMIADEEPIFIADKYTEYGKWMDGWETRRKRIPGHDW 269
+L S + GG+VL +DDFFA+CEN+I +PI A + E G W DGWETRR DW
Sbjct: 24 DLISRALGGQVLGCSDDFFASCENLINPADPIRKAGVFVETGAWYDGWETRRHNTAPCDW 83
Query: 270 CIIKL 284
I+KL
Sbjct: 84 VIVKL 88
Score = 36.3 bits (80), Expect = 0.003
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +3
Query: 60 IHPPSYTSLSELASHSAGGKVLFATDDFFATCENMIADEEPIFIADKYTEYGKWMDGWET 239
+ P + +LA GG V+ +D F +N++ + + D GWET
Sbjct: 183 VFPADLDARLDLAHMYLGGLVVQCSDQHFGKKDNLLLPGRGVNMGD----------GWET 232
Query: 240 RRKRIPGH-DWCIIKLATK 293
R R GH DW I+KL +
Sbjct: 233 ARSREKGHVDWVIVKLGAR 251
Score = 32.3 bits (70), Expect = 0.043
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +2
Query: 386 IDTAFFTGNNAPKFSIQAATL 448
IDT FF GN+AP+ S++AA L
Sbjct: 100 IDTTFFNGNHAPEVSVEAAFL 120
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 28.3 bits (60), Expect = 0.70
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 9 AIALCYCSQLCPLLKMLIHPPSYTSLSELASHSAGGKVLFATDDFFATCENMI 167
A A C C C L L HP + T+L+ L SA K + D T ++ +
Sbjct: 324 ADAACQCGDNCECLGCLTHPNNATTLAALNHISALEKETISHTDLHHTFKHEV 376
>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
Prs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 27.9 bits (59), Expect = 0.92
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -1
Query: 119 FSTSTVTCQLAERSIAWWVNQHLEQWTQLTTVAQSDSG 6
F T V AE +IA W+ ++++ W + V+++ G
Sbjct: 137 FFTRPVDNLYAEPNIAEWIRRNVDDWEEAVVVSKNPGG 174
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 27.5 bits (58), Expect = 1.2
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +3
Query: 138 DFFATCENMIADEEPIFIADKYTEYG-KWMDGWETRRKRIPGHDWCIIKLATKCVIKG*P 314
DF I D+ P++I D +D W R K + ++++ T + P
Sbjct: 323 DFHMAWLEKILDKRPLYINDVLLRQNINNVDEWLRRVKFLEDDSEKVVQVYTDAIKNVNP 382
Query: 315 SERHGSLGMWIS 350
HGSLG S
Sbjct: 383 KLAHGSLGKLFS 394
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 26.6 bits (56), Expect = 2.1
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1
Query: 19 CATVVSCVHCSRC 57
CA+ +CV+CSRC
Sbjct: 1566 CASFANCVYCSRC 1578
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 26.6 bits (56), Expect = 2.1
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1
Query: 19 CATVVSCVHCSRC 57
CA+ +CV+CSRC
Sbjct: 1566 CASFANCVYCSRC 1578
>SPAC1B3.07c |vps28||ESCRT I complex subunit
Vps28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 25.8 bits (54), Expect = 3.7
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 129 ATDDFFATCENMIADEEPIFIADKYTE-YGKWMDGWETRRKRIP 257
+T DF +TCE +I E F ++ T+ +G + D R + P
Sbjct: 54 STSDFNSTCELLIQQWESCFSDERVTQAFGSFEDFCSKYRLQCP 97
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +3
Query: 9 AIALCYCSQL-CPLLKMLIHPPSYT 80
+IALCY S L PLL I+P Y+
Sbjct: 753 SIALCYLSTLPTPLLMRYIYPTLYS 777
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 171 DEEPIFIADKYTEYGKWMDGWETRRKR--IPGHDWCIIKLATKC 296
+++ +I++ YGK DG+E R K + G + L T+C
Sbjct: 306 EDKDKYISEVIDTYGKLADGFEYRAKTFCLEGRGKVLYMLGTEC 349
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 320 APWFLRNVDLHDDLELDSLRLVID-TAFFTGNN 415
APW L N L +L +++ ++D AFF GN+
Sbjct: 487 APWTLVNAPLITNLTHETITSLLDQEAFFHGNS 519
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 253 ILFRLVSQPSIHLPYSVYLSAMNIGSSSAI 164
++FR VS P+ L S+Y S + IGS +
Sbjct: 1136 MIFRYVSDPAEALESSLYSSLIIIGSDDLV 1165
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.0 bits (52), Expect = 6.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 50 QDVDSPTKLYFAQRAGKSQCWWKSI 124
QD+D K Y +++ GK W+ S+
Sbjct: 521 QDLDCFEKFYLSKQVGKKISWYASL 545
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.0 bits (52), Expect = 6.5
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = -2
Query: 298 THLVASLMMHQSCPGILFRLVSQPSIHLPYSVYLSAMNIGSSSAIIFSQVAKKSSVANNT 119
T + +S +++ S P +V+ + YSV S+ I SS+ + S SSV N++
Sbjct: 562 TPITSSSVLNSSTPITSSTVVNTSTPITRYSVLNSSTPITSSTVLNSSTPITSSSVLNSS 621
Query: 118 FP 113
P
Sbjct: 622 TP 623
>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 179 LFISYHIFTGCKEVICGE*YFSTSTVTCQ 93
+F+ + TG K + CG S + +TCQ
Sbjct: 482 VFVVVYFNTGLKGIWCGMILSSVTAITCQ 510
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,529
Number of Sequences: 5004
Number of extensions: 45328
Number of successful extensions: 130
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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