Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17d07
(506 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0640 + 4796079-4797032,4797269-4797934 30 1.2
06_01_1159 - 9852316-9852441,9852743-9852838,9852912-9852977,985... 28 5.0
04_03_0917 + 20798977-20801369,20801578-20801581 28 5.0
10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058... 27 6.5
08_02_1485 - 27466761-27467753 27 6.5
08_02_1284 - 25864049-25864202,25864690-25864880,25865053-258658... 27 6.5
08_02_0258 + 14968858-14970648 27 6.5
07_03_0300 - 16401011-16401435,16401692-16401743 27 6.5
11_01_0060 + 453615-454030,454086-455862 27 8.7
04_04_1265 - 32231511-32231813,32231906-32232024,32232511-322327... 27 8.7
>02_01_0640 + 4796079-4797032,4797269-4797934
Length = 539
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -2
Query: 346 IHIPKEPWRSDGYPFMTHLVASLMMHQSCPGILFRLVSQPSIHL 215
+ +P PWR + H+V ++H+S I RL P ++L
Sbjct: 38 VRLPPGPWRLPVIGSLHHVVGDRLLHRSMARIARRLGDAPLVYL 81
>06_01_1159 - 9852316-9852441,9852743-9852838,9852912-9852977,
9853091-9853180,9853262-9853373,9853515-9853598,
9853864-9853940,9854823-9854873,9854924-9855031,
9855703-9855774,9856952-9857011,9857808-9857876,
9858005-9858088,9858212-9858295,9859106-9859198,
9859930-9860030,9861155-9861264,9863058-9863104,
9863693-9863778,9863940-9864012,9864454-9864540,
9864650-9865301,9866164-9867182,9867702-9867797
Length = 1180
Score = 27.9 bits (59), Expect = 5.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 230 LGDQTEEDPGTRLVHHQAGYQMRHKRIAVGAP 325
LG ++D + H +AG+ +RH+R P
Sbjct: 1107 LGKHPDDDLPVLITHSKAGFSIRHRRTLASLP 1138
>04_03_0917 + 20798977-20801369,20801578-20801581
Length = 798
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = -2
Query: 325 WRSDGYPFMTHLVASLMMHQSCPGILFRLVSQPSIHLPYSVYLSAMNIGSSSAIIFSQVA 146
W+S YP THL + + G+ RLVS+ + P S S ++ + F A
Sbjct: 149 WQSFDYPTNTHLAGAKLGRNKVTGLNRRLVSRKNSVDPASGMYSYELTDNNGSTRFILAA 208
Query: 145 KKSSV 131
SS+
Sbjct: 209 LNSSI 213
>10_07_0172 +
13804803-13805293,13805423-13805537,13805766-13805831,
13805921-13806009,13806103-13806193,13806312-13806458,
13806575-13806667,13806745-13806846,13806957-13807541,
13808523-13808813,13808866-13808937
Length = 713
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -1
Query: 332 GTMALRRLSFYDAFGSQLDDAPVVSRDPLPSG--LPA 228
G + +R LSF D + DD+P S P PS LPA
Sbjct: 21 GRLFIRSLSFDDDMEAAADDSPSTSPMPSPSATLLPA 57
>08_02_1485 - 27466761-27467753
Length = 330
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 66 PPSYTSLSELASHSAGGKVLFATDDFF--ATCENMIADEEPIFIADKY 203
PP + L + GG VLF+T F A+CE M A I ++ Y
Sbjct: 73 PPPTSKLPVILYFHGGGFVLFSTGSVFYHASCEAMAAAVPAIVVSLDY 120
>08_02_1284 -
25864049-25864202,25864690-25864880,25865053-25865895,
25865953-25866896,25867052-25867190,25867259-25867334,
25867666-25867788,25867869-25867952,25868145-25868235,
25868448-25868532,25868620-25868784,25868872-25868928,
25870141-25870302
Length = 1037
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 78 TSLSELASHSAGGKVLFATDDFFATCENMIADEEPIFI 191
TS+ + H AGG+ L TDD +T + + P+ +
Sbjct: 667 TSMGASSLHVAGGRQLLKTDDVPSTSTSPSTNSNPVLL 704
>08_02_0258 + 14968858-14970648
Length = 596
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 254 PGTRLVHHQAGYQMRHKRIAVGAPWFLRNVD 346
P L+ Y+ RH+R A G P + R+V+
Sbjct: 135 PSPHLLDKLRAYEARHRRCAPGTPLYNRSVE 165
>07_03_0300 - 16401011-16401435,16401692-16401743
Length = 158
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 221 DGRLGDQTEEDPGTRLVHHQAGYQMRHKRI 310
D GDQT + P T L HQ G + R +R+
Sbjct: 74 DPLAGDQTIDGPPTDLALHQEGRRRRWRRL 103
>11_01_0060 + 453615-454030,454086-455862
Length = 730
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 168 ADEEPIFIADKYTEYGKWMDGWETRRKRIPGH 263
+D I +++ Y + G+W ETRR+ + H
Sbjct: 687 SDGAYISLSNVYADDGEWQSAEETRRRMVQNH 718
>04_04_1265 -
32231511-32231813,32231906-32232024,32232511-32232721,
32232870-32232942,32233329-32233603,32233684-32233831,
32233906-32234143,32234325-32234457,32234852-32235045,
32235114-32235218,32235332-32236640
Length = 1035
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 239 QTEEDPGTRLVHHQAGYQMRHKRIAVGAPWFLRNVDLHDDLELDSLRLVIDT 394
Q+ + P L+ AG ++ + R G WFL + HDD R V+DT
Sbjct: 153 QSFDHPSNTLI---AGMRLGNNR-QTGDAWFLSSWRAHDDPATGDCRRVLDT 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,642,491
Number of Sequences: 37544
Number of extensions: 310556
Number of successful extensions: 943
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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