Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17d07
         (506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35598-4|CAA84653.1|  488|Caenorhabditis elegans Hypothetical pr...    28   3.4  
M94130-1|AAA91281.1|  288|Caenorhabditis elegans transformer pro...    28   3.4  
M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.        28   3.4  
AL117202-6|CAC42377.1|  287|Caenorhabditis elegans Hypothetical ...    28   3.4  
AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical ...    28   3.4  
Z35597-6|CAI79133.1|   91|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z81127-3|CAB03388.2|  310|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>Z35598-4|CAA84653.1|  488|Caenorhabditis elegans Hypothetical
           protein F10F2.6 protein.
          Length = 488

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 189 IADKYTEYGKWMDGWETRRKRIPGHDWCIIKLATKCVIKG*PSERHGSLGMWIS 350
           I D+Y EYG   DG+ +  +   G  WC   ++ K V+     +   SLG  +S
Sbjct: 297 ILDEY-EYGACSDGFSSYYRAALGIQWCHKLVSNKEVVYSEAEKECDSLGAHVS 349


>M94130-1|AAA91281.1|  288|Caenorhabditis elegans transformer
           protein protein.
          Length = 288

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 199 NIRSTVNGWTAGRPDGRGSRDTTGASSS 282
           N+R T+NG   GRP G   R    A++S
Sbjct: 166 NVRLTINGKRVGRPPGTFKRPQNNAANS 193


>M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.
          Length = 1110

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 199 NIRSTVNGWTAGRPDGRGSRDTTGASSS 282
           N+R T+NG   GRP G   R    A++S
Sbjct: 166 NVRLTINGKRVGRPPGTFKRPQNNAANS 193


>AL117202-6|CAC42377.1|  287|Caenorhabditis elegans Hypothetical
           protein Y47D3A.6b protein.
          Length = 287

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 199 NIRSTVNGWTAGRPDGRGSRDTTGASSS 282
           N+R T+NG   GRP G   R    A++S
Sbjct: 165 NVRLTINGKRVGRPPGTFKRPQNNAANS 192


>AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical
           protein Y47D3A.6a protein.
          Length = 1109

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 199 NIRSTVNGWTAGRPDGRGSRDTTGASSS 282
           N+R T+NG   GRP G   R    A++S
Sbjct: 165 NVRLTINGKRVGRPPGTFKRPQNNAANS 192


>Z35597-6|CAI79133.1|   91|Caenorhabditis elegans Hypothetical
           protein C36E8.6 protein.
          Length = 91

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = +1

Query: 220 GWTAG---RPDGRGSRDTTGASSSWLP 291
           GWT+      DG+GSR+  G   SW P
Sbjct: 53  GWTSSSNVEQDGKGSREALGLGWSWKP 79


>Z81127-3|CAB03388.2|  310|Caenorhabditis elegans Hypothetical
           protein T22G5.3 protein.
          Length = 310

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 126 FATDDFFAT-CENMIADEEPIFIADKYTEYGKWMDGWETR 242
           F   D   T C+N++ D+  +   D      KW+DG +T+
Sbjct: 222 FTRQDLLNTNCQNLVIDKTKLTNNDLNAYIKKWLDGADTK 261


>U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical
           protein B0244.6 protein.
          Length = 982

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 253 ILFRLVSQPSIHLPYSVYLSAMNIGSSSAIIFSQV 149
           I  R ++    +LPY V   A+NIGS+  ++ S V
Sbjct: 110 IYLRFIAPSQDNLPYYVLALALNIGSTYVLLGSYV 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,278,724
Number of Sequences: 27780
Number of extensions: 261578
Number of successful extensions: 664
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)