Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17d07
         (506 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   3.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.2  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   5.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   5.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   5.6  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 361 GARLIKIGNRYSLLHWKQCSKVFNS 435
           G RL+K    +S   +K CSK+ ++
Sbjct: 101 GGRLLKPYPDWSFAEFKDCSKIVSA 125


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 6   SAIALCYCSQLCP 44
           S IA+C C + CP
Sbjct: 99  STIAVCVCMRKCP 111



 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 81  KYSLVGESTS*AMDTTDYSST 19
           KY L+G  T   +   DY+ T
Sbjct: 449 KYDLIGNGTKLIIKNVDYADT 469


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -1

Query: 386 LPILMSRAPGHRGDPHS*GTMALRRLSFYDAF 291
           L I++   P H  D H    ++L+ +  Y+ +
Sbjct: 114 LKIILDFVPNHTSDQHEWFQLSLKNIEPYNNY 145


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -1

Query: 386 LPILMSRAPGHRGDPHS*GTMALRRLSFYDAF 291
           L I++   P H  D H    ++L+ +  Y+ +
Sbjct: 114 LKIILDFVPNHTSDQHEWFQLSLKNIEPYNNY 145


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 379 IGNRYSLLHWKQCSKVFNSSSNTDFRR*KT 468
           IGN  SL H  QC   F  + +   R   T
Sbjct: 798 IGNSQSLAHQDQCCPGFTMTKSGKTRHQNT 827


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,505
Number of Sequences: 438
Number of extensions: 2978
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)