Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17d05
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       57   1e-09
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    30   0.25 
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    27   2.3  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    26   3.0  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    26   4.0  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    26   4.0  
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    25   5.3  

>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 57.2 bits (132), Expect = 1e-09
 Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
 Frame = +1

Query: 79  VREMYSWMDITKRTEIVYDRILLNKNKPLGQQLRSYLNSGVWP---FLLVISLMYILLQL 249
           V++MYSW+D+ +RTE VYD I    N  L  +L+ Y   G W    F L+I++ Y+++ L
Sbjct: 345 VKQMYSWIDVAERTEKVYDSICSENNLRLIDRLKLYYGCGQWAGKLFCLLIAIDYLVMVL 404

Query: 250 TERIYKRKYIDKARD 294
            E I+    ID A D
Sbjct: 405 LEWIWPASDIDPAVD 419


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = -1

Query: 135 IINYLSSFCNVHPTVHLSNQSIAF----KWTHYVSFF 37
           ++N   + C +HP +H S   IAF     W +YV FF
Sbjct: 108 LLNRYITRCALHPVLHQSPHFIAFLENPNWNNYVRFF 144


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +1

Query: 31   DIKEGNIMCPFKCNRLVREMYSWMDITKRTEIVYDRILLNKNKPL 165
            D++ G + C +     + +M+  +D+TK+   V +    N N P+
Sbjct: 1398 DLRFGTLSCSWHMPARIDQMHLLLDVTKKRSNVNEYTSGNNNSPV 1442


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 46  NIMCPFKCNRLVREMYSWMDITKRTEIVYDRILLNKNKP 162
           ++  P    +      ++MD TK TEI Y+ +  +K+ P
Sbjct: 468 SLFTPISFKQYFLNTSNYMDATKDTEISYELLYTSKDSP 506


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -2

Query: 242 SNIYIKLITNRKGQTPELR*LRNCCPSGLFLFSNI-LS*TISVLFVMSIQLYISRTSLLH 66
           S + I    N    +P++R L N      +L+SN  L  T+S+ F+  +Q  + R  LLH
Sbjct: 371 SMLIISEYLNEYKPSPKMRELIN------WLYSNFHLPKTVSLHFLREVQSLVFRYPLLH 424

Query: 65  LNGHIMFPSL 36
              H+   +L
Sbjct: 425 SKIHLAISTL 434


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 229 LNLSLIERAKHQN*GSYVTVA 167
           +NL++ ER KH+  G+YV V+
Sbjct: 377 VNLAVYERLKHRKDGNYVVVS 397


>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 109 TKRTEIVYDRILLNKNKPLGQQLR-SYLNSGVWPFLLVISLMYILLQLTERIYKRKYI 279
           T    +++  +L +  +PL    +   L    WPFLL  S   I+L   + +  RK+I
Sbjct: 205 TSSYNLLWSDLLHSYRQPLKLYAKPEELGDMFWPFLLCFSPSIIMLITVQALAIRKFI 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,056,542
Number of Sequences: 5004
Number of extensions: 40231
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)