Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17d05
         (531 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1090 - 10009008-10009098,10009336-10009439,10009608-100097...    41   7e-04
11_03_0098 - 9981374-9981414,9982091-9982305,9982334-9982635           28   4.1  
01_07_0110 - 41134504-41135763                                         28   4.1  
08_02_0311 - 15635165-15635590,15635777-15638698                       28   5.4  
06_02_0225 + 13257655-13260693                                         28   5.4  
06_01_0083 - 659510-661267,661577-662384,662700-663646                 27   7.1  
03_05_0976 - 29341981-29342229,29342388-29342621,29342771-293430...    27   7.1  

>07_01_1090 -
           10009008-10009098,10009336-10009439,10009608-10009724,
           10009826-10009916,10010581-10010735,10010970-10011542,
           10011851-10011992,10012080-10012123
          Length = 438

 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 23/58 (39%), Positives = 36/58 (62%)
 Frame = +1

Query: 4   VRGIEKAITDIKEGNIMCPFKCNRLVREMYSWMDITKRTEIVYDRILLNKNKPLGQQL 177
           VR + KAI D+  G  + P   +  ++++YSW D+ KRTEIVYDR + +    L ++L
Sbjct: 353 VRAVRKAI-DMLPG--IDPQVMHLRMKKLYSWDDVAKRTEIVYDRAMQSPQTDLLERL 407


>11_03_0098 - 9981374-9981414,9982091-9982305,9982334-9982635
          Length = 185

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 444 HCRLPKVHCNG-QGCTPITNSSSCNRML 524
           HC  P V C+G QG +P+   ++  RML
Sbjct: 96  HCEFPWVDCSGRQGLSPLQKCTAAIRML 123


>01_07_0110 - 41134504-41135763
          Length = 419

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 491 GGAALAIAVNFGKPTVDIYSPVIRVF 414
           GG AL  AV FG+   D++ P +R F
Sbjct: 271 GGVALRTAVPFGQLRPDVFRPFVREF 296


>08_02_0311 - 15635165-15635590,15635777-15638698
          Length = 1115

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +1

Query: 58   PFKCNRLVREMYSWMDITKRTEIVYDR--ILLNKNKPLGQQLRSYLNSGVWPFLLVISLM 231
            P      + ++  W   T   EI + R    L   K +  Q  SYLN G++PF  +  L+
Sbjct: 876  PINLTDRLHQVLRWA--TGSVEIFFSRNNAFLASRKLMLLQRISYLNVGIYPFTSIFLLV 933

Query: 232  YILL 243
            Y  +
Sbjct: 934  YCFI 937


>06_02_0225 + 13257655-13260693
          Length = 1012

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 172 QLRSYLNSGVWPFLLVISLMYILL 243
           Q  +YLN G++PF  +  +MY LL
Sbjct: 784 QRMAYLNVGIYPFTSLFLIMYCLL 807


>06_01_0083 - 659510-661267,661577-662384,662700-663646
          Length = 1170

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +1

Query: 58   PFKCNRLVREMYSWMDITKRTEIVYDR--ILLNKNKPLGQQLRSYLNSGVWPFLLVISLM 231
            P      + ++  W   T   EI + R   LL   K    Q  +YLN G++PF  +  ++
Sbjct: 902  PINLTDRLHQVLRWA--TGSVEIFFSRNNALLASRKMKFLQRIAYLNVGIYPFTSIFLIV 959

Query: 232  YILL 243
            Y  L
Sbjct: 960  YCFL 963


>03_05_0976 -
           29341981-29342229,29342388-29342621,29342771-29343046,
           29343181-29343457,29343549-29343847,29344021-29344152,
           29344451-29344660,29344812-29344875,29346114-29346260,
           29346477-29346760
          Length = 723

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 128 TISVLFVMSIQL-YISRTSLLHLNGHIMFPSLISVIAFSIP 9
           TIS   ++  +  YISR  L H+ G    P   SVI  SIP
Sbjct: 156 TISACILLYYEYKYISRKRLAHITGSPPGPGHFSVIVRSIP 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,913,525
Number of Sequences: 37544
Number of extensions: 205171
Number of successful extensions: 422
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)