Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17d05
         (531 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S74936-1|AAD14160.1|  315|Homo sapiens ria patient LD, periphera...    50   4e-06
D28791-1|BAA05966.1|  484|Homo sapiens PIG-A protein protein.          50   4e-06
D11466-1|BAA02019.1|  484|Homo sapiens PIG-A protein protein.          50   4e-06
BC038236-1|AAH38236.1|  484|Homo sapiens phosphatidylinositol gl...    50   4e-06
X77725-1|CAB57276.1|  248|Homo sapiens PIG-A protein.                  48   3e-05

>S74936-1|AAD14160.1|  315|Homo sapiens ria patient LD, peripheral
           blood  protein.
          Length = 315

 Score = 50.4 bits (115), Expect = 4e-06
 Identities = 20/56 (35%), Positives = 35/56 (62%)
 Frame = +1

Query: 10  GIEKAITDIKEGNIMCPFKCNRLVREMYSWMDITKRTEIVYDRILLNKNKPLGQQL 177
           G+EKAI  +K G +  P   + +V+  Y+W ++ +RTE VYDR+ +    P+ ++L
Sbjct: 189 GLEKAIFQLKSGTLPAPENIHNIVKTFYTWRNVAERTEKVYDRVSVEAVLPMDKRL 244


>D28791-1|BAA05966.1|  484|Homo sapiens PIG-A protein protein.
          Length = 484

 Score = 50.4 bits (115), Expect = 4e-06
 Identities = 20/56 (35%), Positives = 35/56 (62%)
 Frame = +1

Query: 10  GIEKAITDIKEGNIMCPFKCNRLVREMYSWMDITKRTEIVYDRILLNKNKPLGQQL 177
           G+EKAI  +K G +  P   + +V+  Y+W ++ +RTE VYDR+ +    P+ ++L
Sbjct: 358 GLEKAIFQLKSGTLPAPENIHNIVKTFYTWRNVAERTEKVYDRVSVEAVLPMDKRL 413


>D11466-1|BAA02019.1|  484|Homo sapiens PIG-A protein protein.
          Length = 484

 Score = 50.4 bits (115), Expect = 4e-06
 Identities = 20/56 (35%), Positives = 35/56 (62%)
 Frame = +1

Query: 10  GIEKAITDIKEGNIMCPFKCNRLVREMYSWMDITKRTEIVYDRILLNKNKPLGQQL 177
           G+EKAI  +K G +  P   + +V+  Y+W ++ +RTE VYDR+ +    P+ ++L
Sbjct: 358 GLEKAIFQLKSGTLPAPENIHNIVKTFYTWRNVAERTEKVYDRVSVEAVLPMDKRL 413


>BC038236-1|AAH38236.1|  484|Homo sapiens phosphatidylinositol
           glycan anchor biosynthesis, class A (paroxysmal
           nocturnal  protein.
          Length = 484

 Score = 50.4 bits (115), Expect = 4e-06
 Identities = 20/56 (35%), Positives = 35/56 (62%)
 Frame = +1

Query: 10  GIEKAITDIKEGNIMCPFKCNRLVREMYSWMDITKRTEIVYDRILLNKNKPLGQQL 177
           G+EKAI  +K G +  P   + +V+  Y+W ++ +RTE VYDR+ +    P+ ++L
Sbjct: 358 GLEKAIFQLKSGTLPAPENIHNIVKTFYTWRNVAERTEKVYDRVSVEAVLPMDKRL 413


>X77725-1|CAB57276.1|  248|Homo sapiens PIG-A protein.
          Length = 248

 Score = 47.6 bits (108), Expect = 3e-05
 Identities = 18/44 (40%), Positives = 29/44 (65%)
 Frame = +1

Query: 10  GIEKAITDIKEGNIMCPFKCNRLVREMYSWMDITKRTEIVYDRI 141
           G+EKAI  +K G +  P   + +V+  Y+W ++ +RTE VYDR+
Sbjct: 200 GLEKAIFQLKSGTLPAPENIHNIVKTFYTWRNVAERTEKVYDRV 243


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,293,616
Number of Sequences: 237096
Number of extensions: 1239063
Number of successful extensions: 6062
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6062
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5160237082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)