Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17d05
(531 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54284-5|CAA91062.1| 444|Caenorhabditis elegans Hypothetical pr... 42 2e-04
L15314-1|AAF99984.2| 728|Caenorhabditis elegans Anaphase promot... 35 0.042
Z49125-4|CAA88936.1| 644|Caenorhabditis elegans Hypothetical pr... 29 2.1
AC006736-2|AAF60493.1| 529|Caenorhabditis elegans Abnormal cell... 29 2.7
U39472-1|AAK31395.1| 534|Caenorhabditis elegans Cytochrome p450... 28 4.8
U67956-5|AAB07694.1| 724|Caenorhabditis elegans Mechanosensory ... 27 6.3
L25312-1|AAA17404.1| 724|Caenorhabditis elegans mec-10 degeneri... 27 6.3
AL031632-3|CAA21006.1| 283|Caenorhabditis elegans Hypothetical ... 27 6.3
U28971-4|AAK68668.1| 628|Caenorhabditis elegans Hypothetical pr... 27 8.4
>Z54284-5|CAA91062.1| 444|Caenorhabditis elegans Hypothetical
protein D2085.6 protein.
Length = 444
Score = 42.3 bits (95), Expect = 2e-04
Identities = 21/82 (25%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Frame = +1
Query: 4 VRGIEKAITDIKEGNIMCPFKCNRLVREMYSWMDITKRTEIVYDRILLNKNKPLGQ--QL 177
V + KA+ ++G +M P + + V +MY+W D+ RT+++Y + + +++P G+ +L
Sbjct: 334 VDALLKAVDRREKGLLMDPTEKHEAVSKMYNWPDVAARTQVIYQKAV--ESEPTGRLGRL 391
Query: 178 RSYLNSGVWPFLLVISLMYILL 243
+ Y + G+ ++ I + I++
Sbjct: 392 KGYYDQGIGFGIMYIVVSCIII 413
>L15314-1|AAF99984.2| 728|Caenorhabditis elegans Anaphase promoting
complex; seealso mat protein 2 protein.
Length = 728
Score = 34.7 bits (76), Expect = 0.042
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +1
Query: 67 CNRLVREMYSWMDITKRTEIVYDRILLNKNKPLGQQLRSYLNSGVWPFL---LVISLMYI 237
C ++R++ +DI K+ E + +R N + P+ ++S WP L +LM
Sbjct: 454 CEVMLRDVIHSLDIDKKFEDMSERSAGNYDVPIIPISACIISSHYWPKLETEKTEALMPQ 513
Query: 238 LLQLTERIYKRKYIDKARDLRL*YLIS 318
LQ +Y+ Y+D RD +L +L S
Sbjct: 514 PLQAAMDVYQETYLDVKRDRKLEWLRS 540
>Z49125-4|CAA88936.1| 644|Caenorhabditis elegans Hypothetical
protein C47G2.4 protein.
Length = 644
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 350 KISWCFLNNTLEIKYYSLKSLALSIYFLL*ILSVNCSNIYIKLIT 216
KI +NN L YSL LA+ IY + +S+N N+ + +++
Sbjct: 134 KIRAAVINNALYYAIYSLCFLAILIYAMFKGVSINIENLKVIVVS 178
>AC006736-2|AAF60493.1| 529|Caenorhabditis elegans Abnormal cell
migration protein1, isoform b protein.
Length = 529
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -2
Query: 158 LFLFSNILS*TISVLFVMSIQLYISRTSLLH-LNGHIMFPSLISVIAFSI 12
LFL + + TI +F++ + +Y R +LH L MF S IS A S+
Sbjct: 219 LFLSLSSVILTILSVFIVGLSIYFRRLEMLHSLTETAMFFSCISFCATSV 268
>U39472-1|AAK31395.1| 534|Caenorhabditis elegans Cytochrome p450
family protein 23A1 protein.
Length = 534
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2
Query: 407 KLQIILLDLFFAQI*TFT*KISWCFL 330
+L+++LLDLFFA + T + W FL
Sbjct: 326 QLKMLLLDLFFAGMETTVTTLKWAFL 351
>U67956-5|AAB07694.1| 724|Caenorhabditis elegans Mechanosensory
abnormality protein10 protein.
Length = 724
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 163 LGQQLRSYLNSGVWPFLLVISLMYILLQLTERIYKRKYIDKARDLRL 303
LGQ S L W FLL+I + + Q I K + +DK D++L
Sbjct: 112 LGQAPNS-LYRAAWVFLLLICAIQFINQAVAVIQKYQKMDKITDIQL 157
>L25312-1|AAA17404.1| 724|Caenorhabditis elegans mec-10 degenerin
protein.
Length = 724
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 163 LGQQLRSYLNSGVWPFLLVISLMYILLQLTERIYKRKYIDKARDLRL 303
LGQ S L W FLL+I + + Q I K + +DK D++L
Sbjct: 112 LGQAPNS-LYRAAWVFLLLICAIQFINQAVAVIQKYQKMDKITDIQL 157
>AL031632-3|CAA21006.1| 283|Caenorhabditis elegans Hypothetical
protein Y32B12B.3 protein.
Length = 283
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 316 KLNIIVLSLLLCQYTSFYKFSQLIVVIYT 230
K I ++S +LCQ S+ S LI + YT
Sbjct: 5 KTLIFIISGILCQTASYLNLSILIAIFYT 33
>U28971-4|AAK68668.1| 628|Caenorhabditis elegans Hypothetical
protein B0244.10 protein.
Length = 628
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = -3
Query: 307 IIVLSLLLCQYTSFYKFSQLIVVIYTLNLSLIERAKHQN*GSYVTVALVVYFCLV 143
++++SLL+ + T F + Y + S+ + + SY+ ++L+ YF +V
Sbjct: 94 LVIISLLVLESTLFSESLSPTFAYYAVAFSIYDFSMDTLFFSYIMISLITYFGVV 148
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,096,479
Number of Sequences: 27780
Number of extensions: 212688
Number of successful extensions: 526
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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