Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17d02
         (393 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF170708-1|AAD50989.2|  722|Homo sapiens T-box protein TBX3 prot...    31   1.0  
AF002228-1|AAC12947.1|  468|Homo sapiens tbx3 protein.                 31   1.0  
U28049-1|AAA73861.1|  702|Homo sapiens TBX2 protein.                   29   5.5  
BC052566-1|AAH52566.1|  702|Homo sapiens T-box 2 protein.              29   5.5  
AB209378-1|BAD92615.1|  317|Homo sapiens T-box 2 variant protein.      29   5.5  
S81264-1|AAB36216.1|   94|Homo sapiens Hs-TBX2 protein.                29   7.2  
BC025258-1|AAH25258.1|  743|Homo sapiens T-box 3 (ulnar mammary ...    28   9.5  
AF216750-1|AAF61207.1|  596|Homo sapiens TBX3-iso protein.             28   9.5  

>AF170708-1|AAD50989.2|  722|Homo sapiens T-box protein TBX3
           protein.
          Length = 722

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 19/75 (25%), Positives = 34/75 (45%)
 Frame = +3

Query: 30  PRRLRVAPSISPRGTEWSSAIRQFYKQ*I*CNIEPKH*SKIFILLY*YSMKYYVHCTR*G 209
           P+R+ + P     G +W S +  F+K  +  NI  KH   I   ++ Y  ++++      
Sbjct: 181 PKRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDI 240

Query: 210 LKLTKVVFIEFVI*E 254
           LKL    F  ++  E
Sbjct: 241 LKLPYSTFRTYLFPE 255


>AF002228-1|AAC12947.1|  468|Homo sapiens tbx3 protein.
          Length = 468

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 19/75 (25%), Positives = 34/75 (45%)
 Frame = +3

Query: 30  PRRLRVAPSISPRGTEWSSAIRQFYKQ*I*CNIEPKH*SKIFILLY*YSMKYYVHCTR*G 209
           P+R+ + P     G +W S +  F+K  +  NI  KH   I   ++ Y  ++++      
Sbjct: 181 PKRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDI 240

Query: 210 LKLTKVVFIEFVI*E 254
           LKL    F  ++  E
Sbjct: 241 LKLPYSTFRTYLFPE 255


>U28049-1|AAA73861.1|  702|Homo sapiens TBX2 protein.
          Length = 702

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 19/75 (25%), Positives = 33/75 (44%)
 Frame = +3

Query: 30  PRRLRVAPSISPRGTEWSSAIRQFYKQ*I*CNIEPKH*SKIFILLY*YSMKYYVHCTR*G 209
           P+R+ + P     G +W +    F+K  +  NI  KH   I   ++ Y  ++++      
Sbjct: 173 PKRMYIHPDSPATGEQWMAKPVAFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDI 232

Query: 210 LKLTKVVFIEFVI*E 254
           LKL    F  +V  E
Sbjct: 233 LKLPYSTFRTYVFPE 247


>BC052566-1|AAH52566.1|  702|Homo sapiens T-box 2 protein.
          Length = 702

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 19/75 (25%), Positives = 33/75 (44%)
 Frame = +3

Query: 30  PRRLRVAPSISPRGTEWSSAIRQFYKQ*I*CNIEPKH*SKIFILLY*YSMKYYVHCTR*G 209
           P+R+ + P     G +W +    F+K  +  NI  KH   I   ++ Y  ++++      
Sbjct: 173 PKRMYIHPDSPATGEQWMAKPVAFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDI 232

Query: 210 LKLTKVVFIEFVI*E 254
           LKL    F  +V  E
Sbjct: 233 LKLPYSTFRTYVFPE 247


>AB209378-1|BAD92615.1|  317|Homo sapiens T-box 2 variant protein.
          Length = 317

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 19/75 (25%), Positives = 33/75 (44%)
 Frame = +3

Query: 30  PRRLRVAPSISPRGTEWSSAIRQFYKQ*I*CNIEPKH*SKIFILLY*YSMKYYVHCTR*G 209
           P+R+ + P     G +W +    F+K  +  NI  KH   I   ++ Y  ++++      
Sbjct: 120 PKRMYIHPDSPATGEQWMAKPVAFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDI 179

Query: 210 LKLTKVVFIEFVI*E 254
           LKL    F  +V  E
Sbjct: 180 LKLPYSTFRTYVFPE 194


>S81264-1|AAB36216.1|   94|Homo sapiens Hs-TBX2 protein.
          Length = 94

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 18/72 (25%), Positives = 32/72 (44%)
 Frame = +3

Query: 30  PRRLRVAPSISPRGTEWSSAIRQFYKQ*I*CNIEPKH*SKIFILLY*YSMKYYVHCTR*G 209
           P+R+ + P     G +W +    F+K  +  NI  KH   I   ++ Y  ++++      
Sbjct: 22  PKRMYIHPDSPATGEQWMAKPVAFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDI 81

Query: 210 LKLTKVVFIEFV 245
           LKL    F  +V
Sbjct: 82  LKLPYSTFRTYV 93


>BC025258-1|AAH25258.1|  743|Homo sapiens T-box 3 (ulnar mammary
           syndrome) protein.
          Length = 743

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 30  PRRLRVAPSISPRGTEWSSAIRQFYKQ*I*CNIEPKH 140
           P+R+ + P     G +W S +  F+K  +  NI  KH
Sbjct: 181 PKRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKH 217


>AF216750-1|AAF61207.1|  596|Homo sapiens TBX3-iso protein.
          Length = 596

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 30  PRRLRVAPSISPRGTEWSSAIRQFYKQ*I*CNIEPKH 140
           P+R+ + P     G +W S +  F+K  +  NI  KH
Sbjct: 181 PKRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKH 217


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,778,186
Number of Sequences: 237096
Number of extensions: 1039900
Number of successful extensions: 1634
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1634
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2756025120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)