Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17d02
         (393 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110482-4|CAB60337.1|  371|Caenorhabditis elegans Hypothetical ...    29   1.2  
U00036-12|AAK29854.2|  237|Caenorhabditis elegans Hypothetical p...    28   2.1  
AF143152-1|AAD37863.1|  237|Caenorhabditis elegans putative NADH...    28   2.1  
U64835-6|AAG24199.1|  341|Caenorhabditis elegans Serpentine rece...    27   6.3  
U88184-3|AAK31519.1|  648|Caenorhabditis elegans Hypothetical pr...    26   8.4  

>AL110482-4|CAB60337.1|  371|Caenorhabditis elegans Hypothetical
           protein Y39G8B.3 protein.
          Length = 371

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
 Frame = -1

Query: 150 FLINVLVQYCIIFIVCKIVLLHLTILFLSGI----WMAPLVA---SWAYIIQFW 10
           F++ V      +F++CK+   H  +  L+ +    W+  LVA   SW Y   +W
Sbjct: 42  FVVTVYFAIRCVFVICKVRAFHKNLTGLAIVMTVQWLEALVAKFISWPYETGYW 95


>U00036-12|AAK29854.2|  237|Caenorhabditis elegans Hypothetical
           protein R151.6 protein.
          Length = 237

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 10  PELDNVRPGGYEWRHPYPREEQN 78
           P  ++ RPGG+EW    P +EQ+
Sbjct: 214 PLPEDERPGGFEWGDEQPEQEQH 236


>AF143152-1|AAD37863.1|  237|Caenorhabditis elegans putative NADH
           oxidoreductase complexI subunit protein.
          Length = 237

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 10  PELDNVRPGGYEWRHPYPREEQN 78
           P  ++ RPGG+EW    P +EQ+
Sbjct: 214 PLPEDERPGGFEWGDEQPEQEQH 236


>U64835-6|AAG24199.1|  341|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 9 protein.
          Length = 341

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +3

Query: 222 KVVFIEFVI*EKFK*LLHFGWNIFRCYIIWMNR*NVFVCIVWILI 356
           +++ +++ +   F  L HFG + F CY  W    ++F+  +W L+
Sbjct: 64  RIIPLDYAMAHIFYGLCHFG-HPFLCYASWSALLHLFIHSMWSLL 107


>U88184-3|AAK31519.1|  648|Caenorhabditis elegans Hypothetical
           protein F36H5.8 protein.
          Length = 648

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 61  DMDGATRSLLGVHYPILE 8
           DMDG  RSL+G+H   LE
Sbjct: 452 DMDGFYRSLIGLHIKTLE 469


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,774,301
Number of Sequences: 27780
Number of extensions: 165050
Number of successful extensions: 447
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)