Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17d01
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457744-2|CAM36368.1|  169|Caenorhabditis elegans Hypothetical ...    44   9e-05
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    29   2.0  
M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.        29   2.0  
AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z81466-6|CAB03870.1|  545|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z75536-5|CAA99833.1|  545|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AL033512-2|CAA22074.1|  390|Caenorhabditis elegans Hypothetical ...    27   8.2  

>CU457744-2|CAM36368.1|  169|Caenorhabditis elegans Hypothetical
           protein T06A10.3 protein.
          Length = 169

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
 Frame = +1

Query: 178 ITCPYEKAHIVEHYRMHIHLQKCRKQ----HPACNKV-QCPFDATHVVNDVELDFHVTVC 342
           ITCPY   H V     + HL KCR +    +P   K+ +C ++  H + + EL FH   C
Sbjct: 19  ITCPYNSDHKVSMEEFNTHLWKCRTEKLHFYPHSLKLKRCSYNMRHFLPEEELQFHEIFC 78

Query: 343 PKRHMLDTQLYITDDEYRPTVEVH-ATPVLPSDENWDDET 459
            KR   D +  ++ +     V  H A   L  +   D+E+
Sbjct: 79  -KRQSADLRRQLSLEPLELNVAEHLAAQKLRKEYEKDEES 117


>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
           homolog protein 1 protein.
          Length = 1722

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 238 QKCRKQHPACNKVQCPFDAT-HVVND 312
           QKC ++H  C+KV CP   T   VND
Sbjct: 499 QKCDQKHDKCSKVSCPSGQTCSQVND 524


>M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.
          Length = 1110

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/23 (43%), Positives = 19/23 (82%)
 Frame = +1

Query: 523 LDPLREAESEEGIDKDLQTIRID 591
           ++PL++ + +E +D+DLQ IR+D
Sbjct: 595 VEPLQQQQQQEPMDQDLQDIRVD 617


>AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical
           protein Y47D3A.6a protein.
          Length = 1109

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/23 (43%), Positives = 19/23 (82%)
 Frame = +1

Query: 523 LDPLREAESEEGIDKDLQTIRID 591
           ++PL++ + +E +D+DLQ IR+D
Sbjct: 594 VEPLQQQQQQEPMDQDLQDIRVD 616


>Z81466-6|CAB03870.1|  545|Caenorhabditis elegans Hypothetical
           protein F18C12.3 protein.
          Length = 545

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 2/157 (1%)
 Frame = +1

Query: 112 KHVKIKFQKMEVTIANPKPNQMITCPYEKAHIVEHYRMHIHLQKCRKQHPACNKVQCPFD 291
           K V+ + +++E      K  Q+     +   +    + +   +K  K  P   KV+    
Sbjct: 338 KLVEEEDEEVETVKNQKKMKQIFEKELKSKEVKNPKKSNKSTKKPTKSAPIVKKVEEKKV 397

Query: 292 ATHVVNDVELDFHVTVCPKRHMLDTQLYITDDEYRPTVEVHATPVLP--SDENWDDETST 465
             + V+D E D   T+  K  +          ++  T    A  V P   DEN DDE+S+
Sbjct: 398 EENEVSDDESD-QKTLVMKVDLSKGGKIAKAQKFSTTAPKSAKIVAPVSEDENDDDESSS 456

Query: 466 SYIPDPSKKGAHIITKS*RLDPLREAESEEGIDKDLQ 576
            ++P   K G   +    ++ P + +E+ E +DK  Q
Sbjct: 457 FFLP---KSG---VVAPRKIIPKKPSENVEKVDKRFQ 487


>Z75536-5|CAA99833.1|  545|Caenorhabditis elegans Hypothetical
           protein F18C12.3 protein.
          Length = 545

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 2/157 (1%)
 Frame = +1

Query: 112 KHVKIKFQKMEVTIANPKPNQMITCPYEKAHIVEHYRMHIHLQKCRKQHPACNKVQCPFD 291
           K V+ + +++E      K  Q+     +   +    + +   +K  K  P   KV+    
Sbjct: 338 KLVEEEDEEVETVKNQKKMKQIFEKELKSKEVKNPKKSNKSTKKPTKSAPIVKKVEEKKV 397

Query: 292 ATHVVNDVELDFHVTVCPKRHMLDTQLYITDDEYRPTVEVHATPVLP--SDENWDDETST 465
             + V+D E D   T+  K  +          ++  T    A  V P   DEN DDE+S+
Sbjct: 398 EENEVSDDESD-QKTLVMKVDLSKGGKIAKAQKFSTTAPKSAKIVAPVSEDENDDDESSS 456

Query: 466 SYIPDPSKKGAHIITKS*RLDPLREAESEEGIDKDLQ 576
            ++P   K G   +    ++ P + +E+ E +DK  Q
Sbjct: 457 FFLP---KSG---VVAPRKIIPKKPSENVEKVDKRFQ 487


>AL033512-2|CAA22074.1|  390|Caenorhabditis elegans Hypothetical
           protein Y49A3A.3 protein.
          Length = 390

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 268 NKVQCPFDATHVVNDVELDFHVTVCPKR 351
           +++ CP D  H +   +L+ H+T C  R
Sbjct: 50  DRMVCPNDGKHTILKADLEIHLTRCNSR 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,300,738
Number of Sequences: 27780
Number of extensions: 289063
Number of successful extensions: 886
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)