Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17d01
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               22   4.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   7.3  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 178 ITCPYEKAHIVEH 216
           ITC  EK+HI+++
Sbjct: 79  ITCALEKSHIIQN 91


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +2

Query: 242 SAANNIRLVTKCSARLMLHTSLMMWNSIST*RCALNVTCWTHS 370
           S   +++ V KC+      T    W    T RC +N   W HS
Sbjct: 158 SCVPSVKHVAKCA------TDFSSW-PYDTHRCRINFGSWVHS 193


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -3

Query: 277 ALCYKP-DVVCGTSAGVCASCSVLLYA 200
           AL  +P D+VCG        C  ++YA
Sbjct: 711 ALVLRPTDIVCGIQRFAAGFCFTVVYA 737


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/19 (42%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -1

Query: 210 YYMRLLVWACYH-LIRLRV 157
           YY+ +L WA ++ L+ LR+
Sbjct: 114 YYIIILAWALFYLLVSLRI 132


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/19 (42%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -1

Query: 210 YYMRLLVWACYH-LIRLRV 157
           YY+ +L WA ++ L+ LR+
Sbjct: 167 YYIIILAWALFYLLVSLRI 185


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 231 YVHPVVFYYMRLLVWACYHL 172
           Y H V F+ M  L+W   HL
Sbjct: 76  YSHTVDFHVMLKLMWEQSHL 95


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 408 FHCRSVLVIRDVQLCVQHVTFRAHR 334
           F   S+LV+ +V     HVT   HR
Sbjct: 152 FAATSLLVVAEVCYFTAHVTHPRHR 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,828
Number of Sequences: 438
Number of extensions: 3398
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)