Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17c24
(533 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 53 2e-08
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 49 4e-07
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 37 0.002
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 31 0.082
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 29 0.44
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 29 0.58
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 28 1.0
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 27 1.8
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 25 7.1
SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomy... 25 9.4
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 25 9.4
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch... 25 9.4
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 53.2 bits (122), Expect = 2e-08
Identities = 35/120 (29%), Positives = 55/120 (45%)
Frame = +2
Query: 140 WTFSIISNIAYLNYGLQNGWISPFAKKLQSEDSPTGRPLTSTEFYWVASVSSLAAMFGVS 319
W S ++ I+ L +G G IS L S+ G L+S + + S +S AA+ +
Sbjct: 82 WVLSAVAGISGLLFGYDTGVISGALAVLGSD---LGHVLSSGQKELITSATSFAALISAT 138
Query: 320 AFAALADGLGRKIGVVAVAAVQALCWIIKLCPSTTVTLIIARICSGLGAGGAFAIVPMYI 499
LAD +GRK ++ A+ + +I +++ R G G G IVPMYI
Sbjct: 139 TSGWLADWVGRKRLLLCADAIFVIGSVIMAASRNVAMMVVGRFIVGYGIGLTSLIVPMYI 198
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 49.2 bits (112), Expect = 4e-07
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 1/155 (0%)
Frame = +2
Query: 59 NNTSLKNTEDMSQTSEESTKKGHTYLQWTFSIISNIAYLNYGLQNGWISPFAKKLQSEDS 238
+N SL ++ T E+ W + + I L +G G IS + + S
Sbjct: 64 SNISLSEPHALNDTVEDQPVSKWV---WVLAFAAGIGGLLFGYDTGVISGALVVIGT--S 118
Query: 239 PTGRPLTSTEFYWVASVSSLAAMFGVSAFAALADGLGRKIGVVAVAAVQALCW-IIKLCP 415
G LT+ ++ S +SL A+ G ALAD GRK V+A+A++ + I+++
Sbjct: 119 LGGHELTNGGKEFITSATSLGALLGGIIAGALADFFGRK-PVIAIASIIIIVGSIVQVTA 177
Query: 416 STTVTLIIARICSGLGAGGAFAIVPMYIKRN*PEQ 520
+I+ R G G G A I+P+Y+ P +
Sbjct: 178 HHLWHMIVGRFVIGWGVGIASLIIPLYLSEIAPSK 212
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/82 (21%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +2
Query: 254 LTSTEFYWVASVSSLAAMFGVSAFAALADGLGRKIGVVAVAAVQALCWIIKL-CPSTTVT 430
L+S + + ++ ++FG + +AD G+++ ++ AV + I+++ + V
Sbjct: 57 LSSARQGLLTGMVNVGSLFGCIISSPIADRFGKRLSIIGFCAVYIIGIIVQVTAVPSWVQ 116
Query: 431 LIIARICSGLGAGGAFAIVPMY 496
+++A+I +G+G G + P Y
Sbjct: 117 IMVAKIWTGIGIGALSVLAPGY 138
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 31.5 bits (68), Expect = 0.082
Identities = 21/75 (28%), Positives = 32/75 (42%)
Frame = +2
Query: 275 WVASVSSLAAMFGVSAFAALADGLGRKIGVVAVAAVQALCWIIKLCPSTTVTLIIARICS 454
W+ S LA+ + A + LGRKI + L + + LI+ R
Sbjct: 135 WIGSAYVLASNAVLPAVGVFCNILGRKIVLYICIFFFMLGSALCGASQNMIWLIVCRAIQ 194
Query: 455 GLGAGGAFAIVPMYI 499
GLG GG ++V + I
Sbjct: 195 GLGGGGIISLVNIII 209
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 29.1 bits (62), Expect = 0.44
Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +2
Query: 263 TEFYWVASVSSLAAMFGVSAFAALADGLGRKIGVVAVAAVQALCWIIKLCPSTT--VTLI 436
+ + W+ + SLA + +++ +GRKI V ++ + +C + + L+
Sbjct: 125 SSYSWIGTAYSLAETSILPFCGIMSEVVGRKI--VLYTSIVLFLFGSAMCGAAQNMLWLV 182
Query: 437 IARICSGLGAGGAFAIVPMYI 499
+ R G+G GG ++V + I
Sbjct: 183 LCRAVQGIGGGGIMSLVTIVI 203
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 28.7 bits (61), Expect = 0.58
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +2
Query: 296 LAAMFGVSAFAALADGLGRKIGVVAVAAVQALCWIIKLCPSTTVTLIIARICSGLGAG 469
L FG FA ++ GRKIGV+ + L I + ++ R +GL AG
Sbjct: 103 LGIAFGPMIFAPFSEVNGRKIGVLVPFFLSILFTIGTASSDSVAAIMCTRFFAGLFAG 160
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 27.9 bits (59), Expect = 1.0
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +2
Query: 332 LADGLGRKIGVVAVA-AVQALCWIIKLCPSTTVTLIIA----RICSGLGAGGAF 478
+ DGLG K+G+V A A ++I TLI++ IC G+G G F
Sbjct: 210 IQDGLGEKVGLVFFAIATFVSGFVIAFIRHWKFTLILSSMFPAICGGIGLGVPF 263
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 27.1 bits (57), Expect = 1.8
Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +2
Query: 263 TEFYWVASVSSLAAMFGVSAFAALADGLGRKIGVVAVAAVQALCWIIKLCPSTT--VTLI 436
+ + W+ + +LA + +++ +GRKI V ++ + +C + + L+
Sbjct: 125 SSYSWIGTAYTLAQTSILPFCGIMSEVVGRKI--VLYTSIVLFLFGSAMCGAAQNMLWLV 182
Query: 437 IARICSGLGAGGAFAIVPMYI 499
+ R G+G GG ++V + I
Sbjct: 183 LCRAVQGIGGGGITSLVTIVI 203
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.0 bits (52), Expect = 7.1
Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Frame = +2
Query: 56 ENNTSLKNTEDMSQTSEESTK-----KGHTYLQWTFSIISNIAYLNYGL--QNGWISPFA 214
+N L +++ +E+ T+ + + QW F +++N L YG + ++S F
Sbjct: 217 DNQVYLDTVKEICTETEQHTQTLVHFQSRNFHQWYFELVNNFNLLFYGFGSKEHFLSSFV 276
Query: 215 KK 220
+K
Sbjct: 277 EK 278
>SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 136
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 56 ENNTSLKNTEDMSQTSEES 112
ENN SLKN ED T E+
Sbjct: 109 ENNASLKNDEDDLNTKTEN 127
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 311 GVSAFAALADGLGRKIGVVAVAAVQALC 394
GV LAD L K+ + A A+Q+ C
Sbjct: 142 GVQLDTQLADHLNNKMNISAPTAIQSCC 169
>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 287
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -3
Query: 471 PPAPRPLQILAIIRVTVVEGHSFMIQQR 388
P P P ++ +IR T++ H+ +I Q+
Sbjct: 250 PEIPNPARVDWVIRYTILTRHTAVIHQK 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,139,787
Number of Sequences: 5004
Number of extensions: 42316
Number of successful extensions: 132
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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