Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17c24
         (533 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       26   0.21 
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    23   1.5  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   1.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   3.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   4.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.0  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   7.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 26.2 bits (55), Expect = 0.21
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +1

Query: 346 RQKNRGRRRGCGAGSLLDHKTVSFNNSNSDNCENL*RPGSWWSFRDSPNVYKKK 507
           R K RG  +G   G   +     FNN N D  +N     + +  +D+ N  +KK
Sbjct: 80  RGKGRGHGKGGSRGRGGNRGRTGFNNKNKDGDDNNDYEDNDYGNQDNRNDRRKK 133


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 500 LYTLGLSRKLHQLPGRYRFSQLSEL 426
           L+T+ L R L    G+Y FS+  +L
Sbjct: 132 LFTIELDRVLESPRGKYEFSKYDKL 156


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 500 LYTLGLSRKLHQLPGRYRFSQLSEL 426
           L+T+ L R L    G+Y FS+  +L
Sbjct: 147 LFTIELDRVLESPRGKYEFSKYDKL 171


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 59  NNTSLKNTEDMSQTSEESTKKG 124
           N TSLK ++ +S     S KKG
Sbjct: 167 NRTSLKTSKIVSYPKSRSRKKG 188


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 82  RGHVTNK*RIYEKRTHVPAVDFLYNIKHSLLELRVAKWLD 201
           RG   +  R  EKR  VPA D L   K +  E+  A++L+
Sbjct: 389 RGETQSNYREMEKRQSVPANDLLTTEKDN-NEIVTAQFLN 427


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 12/46 (26%), Positives = 17/46 (36%)
 Frame = +2

Query: 41  LCK*RENNTSLKNTEDMSQTSEESTKKGHTYLQWTFSIISNIAYLN 178
           LC   + +T+  N         + T   H Y  W   +IS   Y N
Sbjct: 153 LCNHIKYSTNKGNIRSAITIFPQRTDGKHDYRVWNHQLISYAGYKN 198


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 481 RESSTSSQAATDSRNYQSY 425
           R  +T    ATDSR+Y  Y
Sbjct: 161 RPRTTFEPRATDSRHYDRY 179


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 63  TRVSRIQRTCHKQVKNLRKKDTRTC 137
           T+ S+  RT H +++  R+   R C
Sbjct: 43  TKKSQGSRTTHNELEKNRRAHLRNC 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,582
Number of Sequences: 438
Number of extensions: 3040
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)