Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17c22
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    26   3.4  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    26   3.4  
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    26   3.4  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   4.5  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   5.9  
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb...    25   7.8  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    25   7.8  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    25   7.8  

>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +3

Query: 9   ISFPTKMAELEPLKAEVPDKKTLKEK---YLYIKENATVEPVLAFYVIPSVLTKLASQN 176
           IS+   M+ L P      +   L+ K   YLY+K  A+V+P  A   +  +L  + S N
Sbjct: 42  ISYGYDMSSLFPSVISSMESNNLELKKLCYLYLKIYASVKPTEAKRAVKLILNDIYSSN 100


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 334 AVNNTFFHVSIPA--ISSWMSNSSFKYFVPSLFRRASQISSP*FLL 203
           A  +T  HVS+ A   SS+  NSS   F+  LF+  S   S  F L
Sbjct: 201 AAESTNSHVSLDASNFSSYAENSSKFLFLQELFKNLSPSYSKTFFL 246


>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 1/128 (0%)
 Frame = +3

Query: 81  EKYLYIKENATVEPVLAFYVIPSVLTKLASQNLSLDKACRVNKNYGEEICDALLNREGTK 260
           EK L +K +  + P++ F  + + L +    N ++         YGE + +  ++     
Sbjct: 50  EKKLLLKMDLVISPIIGFLYLMAFLDRSNIGNAAVAGMTEALSLYGERL-NVAVSIFYVL 108

Query: 261 YLKEELDIQELIAGIETWKNVLLTAMP-SFLILFLGAWSDRTGKRKMCILLPIIGELLAC 437
           Y+  E     L+  I+  + +   +   S  +LF G  S   G   +     I+G L  C
Sbjct: 109 YILVETPSVVLVKRIKASRMLAFISFAWSMTVLFSGFMSSYGG---LIATRLILGLLEGC 165

Query: 438 ISNLVNTY 461
           +   +N Y
Sbjct: 166 LFPALNLY 173


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 438 YMREALLLLVREYTFFSFPFCHSTLREKVLRNLASLLIIHFSMFLY 301
           Y+R ++L+     T FSF    S +       L +L  I +S FLY
Sbjct: 634 YLRYSILMGSIGITLFSFAKTRSGILGAASFTLVALFAIFYSTFLY 679


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 144  PSVLTK-LASQNLSLDKACRVNKNYGEEIC 230
            P+VL+K  AS N S     R+ KN+  ++C
Sbjct: 1410 PTVLSKKAASLNYSQSLFVRIQKNFSNQMC 1439


>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 6   TISFPTKMA-ELEPLKAEVPDKKTLKEKYLYIKENATVEPVLAFYVIPSVL 155
           T  F T  A  L+P K+    K+T+ +K L +K+N  V     F++  +VL
Sbjct: 44  TTFFNTLFATSLQPEKSYETAKETIAKKTLEVKKNKAVIEEDGFHINLTVL 94


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = +3

Query: 222 EICDALLNREGTKYLKEELDIQELIAGIETWKNVLLTAMPSFLIL 356
           E C  +++ +  K+L+E L    +    + W+N++  A  +  +L
Sbjct: 636 EACGYMISAQPQKHLQERLIFDLMALPNQAWENIVAQAAQNAQVL 680


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = +3

Query: 33  ELEPLKAEVPDKKTLKEKYLYIKENATVEPVLAFYVIPSVLTK 161
           EL  +   +     ++E    ++ +   EP L  Y++P  L K
Sbjct: 753 ELGEINTHLSRHPNVRENITLVRRDKDEEPTLVAYIVPQGLNK 795


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,825,193
Number of Sequences: 5004
Number of extensions: 35221
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)