Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17c22
(473 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0034 - 21741148-21741275,21741890-21741928,21742007-217421... 33 0.089
12_02_0451 - 19179592-19179648,19179745-19179879,19180214-191802... 33 0.12
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998... 29 1.4
01_07_0359 - 43042675-43042758,43042956-43043024,43043099-430431... 29 1.4
11_01_0464 + 3597568-3600244,3600345-3600742 28 4.4
07_01_0022 - 146406-146498,146616-146693,146967-147020,147729-14... 27 5.8
04_03_0240 - 13228046-13228170,13228247-13228307,13229301-132293... 27 7.7
>05_05_0034 -
21741148-21741275,21741890-21741928,21742007-21742121,
21742227-21742292,21743213-21743371,21743573-21743609,
21743757-21744194,21744735-21744817,21744920-21744956,
21745146-21745214,21745316-21745407,21745481-21745565,
21745903-21745982,21746327-21746724,21746813-21747717,
21747825-21747915,21748617-21750680,21750681-21750749,
21750850-21751273,21751644-21751763
Length = 1832
Score = 33.5 bits (73), Expect = 0.089
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = +2
Query: 269 RRIRHPRTDSWYRNMEKCIINSDAKFLNTFSRSVE*QNGKE 391
+R + RT+SWYRN EK +N+++ + SV+ ++G+E
Sbjct: 444 QRDQSSRTNSWYRNQEK-PVNAESSLCSVTKSSVQVEHGQE 483
>12_02_0451 -
19179592-19179648,19179745-19179879,19180214-19180247,
19180347-19180423,19180523-19180598,19180792-19180925,
19181772-19181878,19182505-19182808,19182913-19183218
Length = 409
Score = 33.1 bits (72), Expect = 0.12
Identities = 14/58 (24%), Positives = 31/58 (53%)
Frame = -2
Query: 454 LTKLLIHARSSPIIGKRIHIFLFPVLSLHAPRKSIKKLGIAVNNTFFHVSIPAISSWM 281
+T +LI ++ I R+ F F + + + +K G+ +N+ FH+S+P +++
Sbjct: 277 ITSMLIASKYEEICAPRVEEFCFITDNTYTKAEVLKMEGLVLNDMGFHLSVPTTKTFL 334
>05_05_0030 -
21698625-21698752,21699589-21699627,21699708-21699822,
21699927-21699992,21701064-21701203,21701424-21701473,
21701608-21702045,21702757-21702839,21702941-21702977,
21703366-21703457,21703531-21703615,21703950-21704029,
21704049-21704105,21704350-21704747,21706322-21707223,
21707331-21707421,21708123-21710273,21710375-21710813,
21711180-21711299
Length = 1836
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +2
Query: 269 RRIRHPRTDSWYRNMEKCIINSDAKFLNTFSRSVE*QNGKE 391
+R + T+SWY+N EK +N+++ + SV+ ++G+E
Sbjct: 449 QRDQSSMTNSWYQNQEK-PVNAESSLCSVTKSSVQVEHGQE 488
>01_07_0359 -
43042675-43042758,43042956-43043024,43043099-43043159,
43043260-43043768,43044545-43045153,43045697-43045972,
43046581-43046769,43047006-43047116,43047621-43047908,
43047990-43048041,43048648-43048824,43049249-43049314,
43049675-43049929,43050071-43050577,43050807-43050886,
43050974-43051207
Length = 1188
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/70 (22%), Positives = 35/70 (50%)
Frame = -2
Query: 427 SSPIIGKRIHIFLFPVLSLHAPRKSIKKLGIAVNNTFFHVSIPAISSWMSNSSFKYFVPS 248
+SP + K ++ ++ +++ H P+ S + +G +V T S+P++SS+ + S P
Sbjct: 153 ASPSLVKSLN-YVRSLVARHIPKLSFQPIGHSVAPTSTKQSLPSLSSFFNKSLVSQLTPE 211
Query: 247 LFRRASQISS 218
+ S
Sbjct: 212 AITNMDLVES 221
>11_01_0464 + 3597568-3600244,3600345-3600742
Length = 1024
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 329 NSDAKFLNTFSRSVE*QNGKEKNVYSLTNNRRASRMYQQFGQHVFLL 469
N D +FLN+ + E Q ++S++ NR R+ FG H F L
Sbjct: 329 NEDQEFLNSIANCTELQ------MFSISWNRLEGRLPNSFGNHSFQL 369
>07_01_0022 -
146406-146498,146616-146693,146967-147020,147729-147792,
147900-148018,148207-148278,148544-148596,148746-148836,
148956-149099
Length = 255
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/55 (21%), Positives = 26/55 (47%)
Frame = -2
Query: 466 KKYVLTKLLIHARSSPIIGKRIHIFLFPVLSLHAPRKSIKKLGIAVNNTFFHVSI 302
K + L L++ + + G +H+FL + P ++ + IAVN + + +
Sbjct: 67 KVFHLMNFLVNGVRALVFGFHLHVFLLSAKARSLPTDKLRIIYIAVNAIIYTIQV 121
>04_03_0240 -
13228046-13228170,13228247-13228307,13229301-13229368,
13229979-13230051,13230130-13230231,13231473-13231592,
13231795-13231913,13231990-13232047,13232152-13232208,
13232719-13232851,13233534-13233591,13234592-13234601,
13239996-13240961
Length = 649
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +3
Query: 198 RVNKNYGEEICDALLNREGTKYLKEELDIQELIAGIE 308
RV NYGE++ +AL G + + E +IQ+++ GI+
Sbjct: 603 RVMSNYGEDVVEAL----GYEVDRLESEIQKIVPGIK 635
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,650,982
Number of Sequences: 37544
Number of extensions: 189560
Number of successful extensions: 487
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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