Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17c22
         (473 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    25   0.55 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.2  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   3.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   3.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   6.7  

>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 24.6 bits (51), Expect = 0.55
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 418 IIGKRIHIFLFPVLSLHAPRKSIKKLGIA 332
           +IGK+I   L  VL+ H  R + +++GIA
Sbjct: 48  VIGKKIKELLPEVLNNHCNRCTSRQIGIA 76


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 411 VREYTFFSFPFCHSTLR 361
           +R YT   FP+ H TL+
Sbjct: 455 IRTYTQQQFPYVHDTLQ 471


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 291 LIAGIETWKNVLLTAMP 341
           L  GIE W+N L   +P
Sbjct: 68  LPVGIEIWRNKLFVTVP 84


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 307 KHGKMYY*QRC 339
           +HG +YY QRC
Sbjct: 11  EHGGLYYHQRC 21


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 380 NGKEKNVYSLTNNRRASRMYQ 442
           NGK   ++++T+  +  R+YQ
Sbjct: 94  NGKHSYLHTITSPNKFVRLYQ 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,595
Number of Sequences: 438
Number of extensions: 2198
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)