Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17c20
(455 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 194 4e-51
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 194 4e-51
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 27 1.0
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 1.8
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 27 1.8
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 27 1.8
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 27 1.8
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 27 1.8
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 25 4.2
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom... 25 5.5
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 25 7.3
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 24 9.6
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 24 9.6
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar... 24 9.6
>SPBC336.10c |tif512||translation initiation
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 194 bits (474), Expect = 4e-51
Identities = 85/130 (65%), Positives = 108/130 (83%)
Frame = +1
Query: 64 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 243
M + E FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1 MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60
Query: 244 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 423
V +DIFNG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM +G ++D+++P+G
Sbjct: 61 VALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEG 119
Query: 424 DLGTQLRTDF 453
+LG ++ F
Sbjct: 120 ELGNEIEEGF 129
>SPAC26H5.10c |tif51||translation initiation factor
eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 194 bits (474), Expect = 4e-51
Identities = 85/130 (65%), Positives = 108/130 (83%)
Frame = +1
Query: 64 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 243
M + E FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1 MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60
Query: 244 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 423
V +DIFNG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM +G ++D+++P+G
Sbjct: 61 VALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEG 119
Query: 424 DLGTQLRTDF 453
+LG ++ F
Sbjct: 120 ELGNEIEEGF 129
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 27.5 bits (58), Expect = 1.0
Identities = 18/76 (23%), Positives = 32/76 (42%)
Frame = +2
Query: 2 SVEEPVGHISFLTVVKFKTQQWVTSKTHTLRPETPGPQPPSPCNVRPCVKMVSLC*RVVH 181
S E+P+ +S L+ TS + L P P P PP+ + P + ++ +
Sbjct: 222 STEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPLLSSQTV--KTTT 279
Query: 182 ARLLKCPHPKPESTAT 229
+ + P P S +T
Sbjct: 280 SNASRQPSPLVSSKST 295
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 26.6 bits (56), Expect = 1.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 301 NMDVPHVKREDYQLTDISDDGYL 369
NM +P+++ E Q+ D + D YL
Sbjct: 968 NMSIPYIRGEYVQMIDANQDNYL 990
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 26.6 bits (56), Expect = 1.8
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +1
Query: 124 PMQCSALRKNGFVMLKGRPCKIVEMSTSKTGK-HGHAKVHLVGIDIFNGKKY 276
P +CS ++ ++ C V G+ H H++G+D+ NG Y
Sbjct: 35 PRRCSTCKRINKRSIRCLSCHSVGCLWGHHGEEHAMEHTHMIGVDVKNGHTY 86
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 26.6 bits (56), Expect = 1.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 217 KHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDY 336
K A L+ D F+G ++ IC S N+ + V ED+
Sbjct: 878 KEADAYAPLLAYDKFDGDEFACICESMKNVKLDFVTLEDW 917
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 26.6 bits (56), Expect = 1.8
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 208 KTGKHGHAKVHLVGIDIFNGK-KYEDICPSTHNMDVPHVKRED 333
K G+H A +++ + N K +D CPST D+ H+ R D
Sbjct: 164 KIGQHLSAMGYVIPKEWTNTMVKLQDRCPSTSLKDIDHLFRVD 206
>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 204
Score = 26.6 bits (56), Expect = 1.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 156 FRYAEGSSMQDC*NVHIQNRKARPR*SSLGWD 251
+ + E +Q C N+ +N +A R SS GWD
Sbjct: 41 YHHLEKGLLQQCFNLVKKNMEALYRQSSFGWD 72
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.4 bits (53), Expect = 4.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 319 VKREDYQLTDISDDGYL 369
+KREDY+LT ++ GYL
Sbjct: 91 IKREDYELTLCANCGYL 107
>SPBC16E9.17c |rem1||meiosis-specific cyclin
Rem1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.0 bits (52), Expect = 5.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 300 VCGGTDIFILFTIEDINPNQVNFSVAVLSG 211
+CG T +FI E+I+P V VL G
Sbjct: 219 LCGATALFIACKYEEIHPPTVKDLEIVLEG 248
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 24.6 bits (51), Expect = 7.3
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 139 ALRKNGFVMLKGRPCKIV-EMSTSKTGKHGHAKVHLVGID 255
AL + + ++KGRPC+I+ K G V + +D
Sbjct: 137 ALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLD 176
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 24.2 bits (50), Expect = 9.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 125 GKVAEAPESPVSKCVSSM 72
G+ E P P+SKC+S++
Sbjct: 189 GRYGERPSLPLSKCLSNL 206
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 24.2 bits (50), Expect = 9.6
Identities = 7/29 (24%), Positives = 18/29 (62%)
Frame = -3
Query: 246 NQVNFSVAVLSGFGCGHFNNLAWTTLQHN 160
++++FSV L+ G G + + W ++++
Sbjct: 428 DEISFSVRYLASLGLGDYTKVTWFLVKNS 456
>SPAC222.11 |hem13||coproporphyrinogen III oxidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 312
Score = 24.2 bits (50), Expect = 9.6
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +2
Query: 239 TWLGLISS--MVKSMKISVPPHTTWTY 313
TW GL + V+S+ +++P H +W Y
Sbjct: 263 TWFGLQAPEPRVESILMTLPLHASWRY 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,027,395
Number of Sequences: 5004
Number of extensions: 43068
Number of successful extensions: 145
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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