Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17c19
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     83   2e-17
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...    27   0.91 
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc...    27   1.2  
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   2.8  
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo...    24   8.5  

>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 82.6 bits (195), Expect = 2e-17
 Identities = 47/107 (43%), Positives = 63/107 (58%), Gaps = 11/107 (10%)
 Frame = +3

Query: 135 MFLLRIFVHIAFLFSIFDIYFKSPIVKNIHPIKPIHDAVADRLVLFVVDGLRAESFVN-H 311
           + LL I  H+ FL SIFDIYF +P++  +       +A A RL L V DGLR +  +  H
Sbjct: 5   LLLLGILFHVVFLKSIFDIYFVTPLIHGMKQYSA-GEAPAKRLFLIVGDGLRPDKLLQPH 63

Query: 312 T----------TMPFLRSVANSKGRWGISRTQVPTESRPGHVAIAAG 422
           +            PFLRS+  + G +G+S T+VPTESRPGHVA+ AG
Sbjct: 64  SEKVIGEEQTYAAPFLRSIIQNNGTFGVSHTRVPTESRPGHVALIAG 110


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 27.5 bits (58), Expect = 0.91
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 192 YFKSPIVKNIHPIKPIHDAVADRLVLFVVDGLRAES 299
           Y +  +V N +PIKP      D+L +  + G+ AE+
Sbjct: 356 YIEQIVVTNTYPIKPQAVLECDKLTVIDISGVLAEA 391


>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 349

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = -1

Query: 258 DRQQHREWVL*DECFSQLEI*NIYQ--K*RIKMQYVQKSSIE---TSLCNLQFLKS 106
           D     +WVL D C+S LE+  IY       K+ Y  + S+E    SL   QF++S
Sbjct: 80  DELSPTDWVLNDTCYSFLEVERIYGFIFSDDKISYWDEDSVELKPISLTKDQFIRS 135


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 275 NEQN-KTIGNSIVNGFYRMNVFHNWRFKIYIKNRE*K 168
           NE N KTI + I N  Y   + H  R +  IKN+  K
Sbjct: 112 NEVNEKTIDSKIRNSLYSRTIHHGNRVQKKIKNKHGK 148


>SPBC1861.08c |||U2 snRNP-associated protein Lea1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 6/20 (30%), Positives = 16/20 (80%)
 Frame = +3

Query: 192 YFKSPIVKNIHPIKPIHDAV 251
           +++ PI++N+  ++ +HDA+
Sbjct: 27  WYQIPIIENLGVLRDVHDAI 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,619,162
Number of Sequences: 5004
Number of extensions: 30758
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)