Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17c19
         (423 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0367 + 22399785-22399899,22400911-22401102,22401990-224021...    61   4e-10
08_02_1350 - 26312275-26313613,26314833-26315110                       30   0.67 
11_06_0412 - 23235670-23236512,23236804-23237838                       29   1.5  
02_05_0965 + 33136373-33136512,33136595-33136688,33136845-331368...    27   4.7  
06_03_1496 - 30567968-30568210,30568345-30568513,30568635-305687...    27   6.2  
05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,300...    27   6.2  
01_05_0801 + 25353708-25353914,25354307-25354429,25355035-253552...    27   8.2  

>02_04_0367 +
           22399785-22399899,22400911-22401102,22401990-22402117,
           22402229-22402384,22402948-22403206,22403762-22403836,
           22404288-22404610,22405041-22405274,22405355-22405542,
           22405734-22405869,22405963-22406071,22406988-22407090,
           22407188-22407374,22407467-22407565,22407666-22407724,
           22408581-22408686,22408798-22408962
          Length = 877

 Score = 60.9 bits (141), Expect = 4e-10
 Identities = 30/53 (56%), Positives = 33/53 (62%), Gaps = 5/53 (9%)
 Frame = +3

Query: 279 DGLRAESFVN-----HTTMPFLRSVANSKGRWGISRTQVPTESRPGHVAIAAG 422
           DGLRA+ F           PFLR V   KGRWG+S  + PTESRPGHVAI AG
Sbjct: 40  DGLRADKFFEPDERGRYRAPFLRGVIEEKGRWGVSHARPPTESRPGHVAIIAG 92


>08_02_1350 - 26312275-26313613,26314833-26315110
          Length = 538

 Score = 30.3 bits (65), Expect = 0.67
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +3

Query: 288 RAESFVNHTTMPFLRSVANSKGRWGISRTQVPTESRPGHVAIAA 419
           R++SFVNH+     +SV +SKG    S T +P   R  H+  AA
Sbjct: 456 RSQSFVNHSKWDSPKSVESSKGAPSKSHTFIPL--RKPHLQAAA 497


>11_06_0412 - 23235670-23236512,23236804-23237838
          Length = 625

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
 Frame = +3

Query: 105 NFLRTANCKAMFLLRIFVHIAFLFSIFDI--YFKSPIVKNI-HPIKPIHDAVADRLVLFV 275
           NFL   N +   LLRI V +AFL S++ +   F    +  +   +    DAV D ++++V
Sbjct: 9   NFLIKWNQENYILLRIRVIVAFLISLYALMMLFSGIFLFAMKRSMLSFLDAVTDAILVYV 68

Query: 276 VDGLRAESFVN 308
           +  ++A  F N
Sbjct: 69  MGVMQAAPFKN 79


>02_05_0965 +
           33136373-33136512,33136595-33136688,33136845-33136889,
           33137007-33137174,33137247-33137331,33137531-33137637,
           33137918-33137998,33138232-33138284,33138361-33138460,
           33138911-33139054,33139268-33139364,33139528-33139611,
           33139904-33140123,33140204-33140297,33140406-33140975,
           33141348-33141449,33141564-33141656,33141834-33141836
          Length = 759

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 249 VADRLVLFVVDGLRAESFVNHTTMPFLRSVANS 347
           V DRLVL V+DGL AE  +     P  + +  S
Sbjct: 86  VYDRLVLMVIDGLPAEFVLGRVGKPPSKEMVES 118


>06_03_1496 -
           30567968-30568210,30568345-30568513,30568635-30568736,
           30569087-30571855,30572402-30572430,30572546-30572659,
           30572735-30572846,30574730-30574845,30574928-30575068,
           30575121-30575243,30575346-30575478,30575842-30575972,
           30576065-30576300,30577073-30577376
          Length = 1573

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -3

Query: 214 FTIGDLKYISKIEN--KNAICTKILNRNIALQFAVLKKL 104
           F+  D+ Y++   N  + ++C ++ N N A+ +++ KKL
Sbjct: 702 FSCKDVHYLNDESNNYERSLCARVSNSNDAIAYSLFKKL 740


>05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,
            3003571-3004442,3004592-3004773,3005206-3005295,
            3005388-3005675,3005776-3005997,3006053-3006133,
            3006634-3006861
          Length = 1475

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 205  GDLKYISKIENKNAICTKILNRNIALQFAVLKKLRLHL 92
            GDLK +S +EN+  + T  L  ++A Q   +K+  +HL
Sbjct: 1048 GDLKTVSDVENEGTVKTDKLMASLACQ---VKEKEIHL 1082


>01_05_0801 +
           25353708-25353914,25354307-25354429,25355035-25355205,
           25355303-25355392,25355497-25355583,25355664-25355719,
           25355812-25355905,25356032-25356144,25356211-25356283,
           25356603-25356683,25356865-25356951,25357031-25357135,
           25357279-25357385,25357481-25357541,25357931-25358158,
           25359720-25360677,25360816-25360997,25361237-25361326,
           25361422-25361709,25361844-25362056,25362560-25362784
          Length = 1212

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -3

Query: 235 GFIG*MFFTIGDLKYISKIENKNAICTKILNRNIALQFAV 116
           G IG      GDLK I+ +EN+ A  T  L  N+A Q  V
Sbjct: 806 GLIGDHLRKNGDLKTINDLENEGARKTDKLVANLANQIEV 845


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,361,490
Number of Sequences: 37544
Number of extensions: 159725
Number of successful extensions: 345
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)