Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17c19
         (423 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22425| Best HMM Match : PigN (HMM E-Value=0)                       106   7e-24
SB_21719| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.098
SB_39886| Best HMM Match : PH (HMM E-Value=0.0007)                     28   2.8  
SB_19870| Best HMM Match : RVT_1 (HMM E-Value=0.18)                    28   3.7  
SB_58950| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_28252| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  

>SB_22425| Best HMM Match : PigN (HMM E-Value=0)
          Length = 913

 Score =  106 bits (255), Expect = 7e-24
 Identities = 53/96 (55%), Positives = 64/96 (66%), Gaps = 5/96 (5%)
 Frame = +3

Query: 150 IFVHIAFLFSIFDIYFKSPIVKNIHPIKPIHDAVADRLVLFVVDGLRAESFVNH-----T 314
           + VHI +L SIFDIYF SP+V  + P K   D  A RLVLFV DGLRA+ F        T
Sbjct: 18  VLVHITYLASIFDIYFTSPLVHGMTPQKSSLDPPAKRLVLFVADGLRADKFFEQDENGLT 77

Query: 315 TMPFLRSVANSKGRWGISRTQVPTESRPGHVAIAAG 422
             P+LR +  S+G WG+S T+VPTESRPGHVA+ AG
Sbjct: 78  RAPYLRHIIESQGCWGVSHTRVPTESRPGHVALIAG 113


>SB_21719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 33.1 bits (72), Expect = 0.098
 Identities = 22/57 (38%), Positives = 30/57 (52%)
 Frame = +3

Query: 228 IKPIHDAVADRLVLFVVDGLRAESFVNHTTMPFLRSVANSKGRWGISRTQVPTESRP 398
           I PI   +    VLF++ G R       TT P  R+V N++GRW ++RT V T   P
Sbjct: 354 ISPIQCVIYTLFVLFLI-GNRPHLQGYFTTSPN-RTVMNAEGRWALTRTFVLTIQPP 408


>SB_39886| Best HMM Match : PH (HMM E-Value=0.0007)
          Length = 597

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -2

Query: 410 SHMTGPRLCRNLSSRYTPSSFRICYRP*EWHSGMIYKRFCT*TINNEQNKTIGNSIV 240
           S ++GPR+ R        S  R    P   HSG+++++      +    K IGN ++
Sbjct: 538 SLLSGPRMKRRRKQASAESEVRFLQDPDATHSGILFQKRPLGVTSKRYCKLIGNHLI 594


>SB_19870| Best HMM Match : RVT_1 (HMM E-Value=0.18)
          Length = 530

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 312 TTMPFLRSVANSKGRWGISRTQVPTESRP 398
           TT P  R+V N++GRW ++RT V T   P
Sbjct: 399 TTSPN-RTVMNAEGRWALTRTFVLTIQPP 426


>SB_58950| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 513

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -2

Query: 401 TGPRLCRNLSSRYTPSSFRI--CYRP*EW 321
           T P+ C+++SS Y P + R+  CY    W
Sbjct: 393 TSPQRCQDISSLYIPHACRLLRCYHTLHW 421


>SB_28252| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -2

Query: 275 NEQNKTIGNSIVNG-FYRMNVFHNWR-FKIYI 186
           N+   T GNS  +  F+R N+FH +R F ++I
Sbjct: 22  NDYYNTYGNSKYSSKFHRFNIFHKYRNFSLHI 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,570,292
Number of Sequences: 59808
Number of extensions: 208643
Number of successful extensions: 505
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)