Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17c19
(423 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024812-8|AAF59557.4| 912|Caenorhabditis elegans Hypothetical ... 84 3e-17
U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain, un... 29 1.0
U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain, un... 29 1.0
U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein. 29 1.0
Z77663-5|CAB01215.1| 365|Caenorhabditis elegans Hypothetical pr... 28 3.2
Z75542-3|CAA99860.1| 359|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical pr... 27 7.3
M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.ele... 27 7.3
Z29117-6|CAA82378.1| 176|Caenorhabditis elegans Hypothetical pr... 26 9.7
>AC024812-8|AAF59557.4| 912|Caenorhabditis elegans Hypothetical
protein Y54E10BR.1 protein.
Length = 912
Score = 84.2 bits (199), Expect = 3e-17
Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 3/94 (3%)
Frame = +3
Query: 150 IFVHIAFLFSIFDIYFKSPIVKNIHP-IKPIHDAVADRLVLFVVDGLRAESFVNHTTM-P 323
I VH+ ++SIFD+Y+ SP+V I P +A A R+ + DGLR ++F + P
Sbjct: 10 ITVHLVLIYSIFDVYYTSPLVHGIPPQFINSQEAPAKRIFIISADGLRYDTFNKYPDKSP 69
Query: 324 FLRSVANS-KGRWGISRTQVPTESRPGHVAIAAG 422
+L S+ N KG +G+SR+ +PTESRPGHVAI AG
Sbjct: 70 YLHSIMNERKGIYGLSRSHIPTESRPGHVAIFAG 103
>U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform a protein.
Length = 1837
Score = 29.5 bits (63), Expect = 1.0
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -3
Query: 184 KIENKNAICTKILNRNIALQF--AVLKKLRLHLYNYFIDKLN 65
+I N I TK L +N A++ A+ K L HL+ + +DK+N
Sbjct: 426 EIRAVNEIVTKPLTKNEAVRSRDALTKMLYSHLFGWLVDKIN 467
>U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform b protein.
Length = 1839
Score = 29.5 bits (63), Expect = 1.0
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -3
Query: 184 KIENKNAICTKILNRNIALQF--AVLKKLRLHLYNYFIDKLN 65
+I N I TK L +N A++ A+ K L HL+ + +DK+N
Sbjct: 426 EIRAVNEIVTKPLTKNEAVRSRDALTKMLYSHLFGWLVDKIN 467
>U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.
Length = 1839
Score = 29.5 bits (63), Expect = 1.0
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -3
Query: 184 KIENKNAICTKILNRNIALQF--AVLKKLRLHLYNYFIDKLN 65
+I N I TK L +N A++ A+ K L HL+ + +DK+N
Sbjct: 426 EIRAVNEIVTKPLTKNEAVRSRDALTKMLYSHLFGWLVDKIN 467
>Z77663-5|CAB01215.1| 365|Caenorhabditis elegans Hypothetical
protein F53F4.6 protein.
Length = 365
Score = 27.9 bits (59), Expect = 3.2
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 93 RCNRNFLRTANCKAMFLLRIFVHIAFLFSIFDIYFKSPIVKNIH 224
R + F + A +F +RIF+ ++FL FK+ I KN++
Sbjct: 145 RRRKMFSQRAFNGIVFCIRIFILVSFLGQTIPFSFKTGIYKNVN 188
>Z75542-3|CAA99860.1| 359|Caenorhabditis elegans Hypothetical
protein F55D12.3 protein.
Length = 359
Score = 27.1 bits (57), Expect = 5.5
Identities = 9/14 (64%), Positives = 14/14 (100%)
Frame = +2
Query: 110 FKNCKLQSDVSIED 151
F+NCK++SD++IED
Sbjct: 119 FRNCKVRSDLTIED 132
>Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical protein
F02A9.6 protein.
Length = 1295
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 291 AESFVNHTTMPFLRSVANSKGRWGISRTQV 380
AE+ +H FLR VAN + R I R Q+
Sbjct: 1148 AEASYHHELAAFLRQVANERHRNDIMRQQI 1177
>Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical protein
F02A9.6 protein.
Length = 1295
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 291 AESFVNHTTMPFLRSVANSKGRWGISRTQV 380
AE+ +H FLR VAN + R I R Q+
Sbjct: 1148 AEASYHHELAAFLRQVANERHRNDIMRQQI 1177
>M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.elegans
glp-1 gene,complete cds. ).
Length = 1295
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 291 AESFVNHTTMPFLRSVANSKGRWGISRTQV 380
AE+ +H FLR VAN + R I R Q+
Sbjct: 1148 AEASYHHELAAFLRQVANERHRNDIMRQQI 1177
>Z29117-6|CAA82378.1| 176|Caenorhabditis elegans Hypothetical
protein C48B4.6 protein.
Length = 176
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +3
Query: 126 CKAMFLLRIFVHIAFLFSIFDIYFKSPIVKNIHPIKP 236
C MF L +I F + K P++ ++ IKP
Sbjct: 122 CSIMFSLYYIGYIVVCFLFIEALEKKPVLPQVYSIKP 158
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,826,187
Number of Sequences: 27780
Number of extensions: 169576
Number of successful extensions: 465
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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