Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17c18
(493 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 274 8e-74
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 274 8e-74
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 274 8e-74
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 274 8e-74
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 214 1e-55
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 34 0.31
AB016767-1|BAA74724.1| 523|Homo sapiens telomerase transcriptas... 29 6.6
CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein. 29 8.8
BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying pro... 29 8.8
AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein. 29 8.8
AK127331-1|BAC86934.1| 178|Homo sapiens , member 1 (TRPV1). pr... 29 8.8
AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens ... 29 8.8
AE006464-22|AAK61254.1| 1053|Homo sapiens Similar to pre-pro-meg... 29 8.8
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 274 bits (673), Expect = 8e-74
Identities = 125/157 (79%), Positives = 139/157 (88%)
Frame = +3
Query: 21 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 200
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 201 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 380
D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 381 LGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAK 491
LGRKKGAKLT EE I+NKKRS+K +KY R++ AK
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAK 157
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 274 bits (673), Expect = 8e-74
Identities = 125/157 (79%), Positives = 139/157 (88%)
Frame = +3
Query: 21 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 200
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 201 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 380
D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 381 LGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAK 491
LGRKKGAKLT EE I+NKKRS+K +KY R++ AK
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAK 157
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 274 bits (673), Expect = 8e-74
Identities = 125/157 (79%), Positives = 139/157 (88%)
Frame = +3
Query: 21 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 200
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 201 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 380
D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 381 LGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAK 491
LGRKKGAKLT EE I+NKKRS+K +KY R++ AK
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAK 157
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 274 bits (673), Expect = 8e-74
Identities = 125/157 (79%), Positives = 139/157 (88%)
Frame = +3
Query: 21 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 200
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 201 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 380
D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 381 LGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAK 491
LGRKKGAKLT EE I+NKKRS+K +KY R++ AK
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAK 157
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 214 bits (523), Expect = 1e-55
Identities = 108/157 (68%), Positives = 122/157 (77%)
Frame = +3
Query: 21 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 200
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGG
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG--------- 51
Query: 201 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 380
C TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 52 ----------C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 100
Query: 381 LGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAK 491
LGRKKGAKLT EE I+NKKRS+K +KY R++ AK
Sbjct: 101 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAK 137
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 33.9 bits (74), Expect = 0.31
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +3
Query: 405 LTEAEEAIINKKRSQKTARKYLARQRLAK 491
LT EE I+NKKRS+K +KY R++ AK
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKKNAK 29
>AB016767-1|BAA74724.1| 523|Homo sapiens telomerase transcriptase
protein.
Length = 523
Score = 29.5 bits (63), Expect = 6.6
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 250 RVLRVEHSDPQEKLPVSRRSARYLVFPPRERTE 152
R R E PQ+ + V RS R L PPR RT+
Sbjct: 411 RTARCELRSPQQPVSVPGRSPRALWRPPRRRTQ 443
>CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein.
Length = 201
Score = 29.1 bits (62), Expect = 8.8
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 384 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR 476
GRKK +++TE ++AI+ K+ + R+Y R
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKR 36
>BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying
protein 6 protein.
Length = 201
Score = 29.1 bits (62), Expect = 8.8
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 384 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR 476
GRKK +++TE ++AI+ K+ + R+Y R
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKR 36
>AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein.
Length = 201
Score = 29.1 bits (62), Expect = 8.8
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 384 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR 476
GRKK +++TE ++AI+ K+ + R+Y R
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKR 36
>AK127331-1|BAC86934.1| 178|Homo sapiens , member 1 (TRPV1).
protein.
Length = 178
Score = 29.1 bits (62), Expect = 8.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 315 NAIVVVDATPFRQWYESHYTLPLGRKKGAKLT 410
N I+ V TPF W + H++ P G LT
Sbjct: 5 NPIIAVFRTPFAPWLQFHWSAPFSAWLGTVLT 36
>AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ11749 fis, clone HEMBA1005558, weakly similar to
NUCLEAR PROTEIN SNF7. ).
Length = 201
Score = 29.1 bits (62), Expect = 8.8
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 384 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR 476
GRKK +++TE ++AI+ K+ + R+Y R
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKR 36
>AE006464-22|AAK61254.1| 1053|Homo sapiens Similar to
pre-pro-megakarycyte potentiating factor precursor
protein.
Length = 1053
Score = 29.1 bits (62), Expect = 8.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 93 SSCVWAHVSHRWPFAYAS 40
+SC WA HRWP + S
Sbjct: 221 TSCAWAQAVHRWPVLWGS 238
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,629,613
Number of Sequences: 237096
Number of extensions: 1632982
Number of successful extensions: 3680
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3680
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4423060356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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