Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17c16
(225 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S... 31 0.021
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 27 0.25
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy... 27 0.44
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 1.0
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 24 2.4
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 23 4.1
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc... 23 4.1
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote... 22 9.5
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 22 9.5
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 22 9.5
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe... 22 9.5
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch... 22 9.5
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 22 9.5
>SPAC27F1.05c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 1|||Manual
Length = 484
Score = 31.1 bits (67), Expect = 0.021
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 1 NVFRIKPPMCITKQDVDFGISIINDAIKK 87
+VFR PP+ I + D+D G+S + A+ K
Sbjct: 442 SVFRFLPPLTIPEADLDEGLSAVESAVAK 470
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 27.5 bits (58), Expect = 0.25
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 4 VFRIKPPMCITKQDVDFGISIINDAI 81
VFRI PP+ +T +++ I I + A+
Sbjct: 412 VFRIAPPLTVTDEEIHKAIEIFDSAL 437
>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 26.6 bits (56), Expect = 0.44
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 175 YSNNLKQCILYKNKNFQTGKDFYYTL 98
Y NL Q ++ K F +GK+ Y+TL
Sbjct: 352 YGVNLNQSVILKAIGFSSGKNEYHTL 377
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.4 bits (53), Expect = 1.0
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = -3
Query: 184 FPKYSNNLK---QCILY-KNKNFQTGKD 113
F S NL Q +LY KN+NFQTG +
Sbjct: 493 FDSLSRNLSLTVQTVLYLKNRNFQTGNE 520
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 117 LPV*KFLFLYNIHCFKLFEYL 179
+P+ KF YNIHC F+ L
Sbjct: 978 IPIIKFTGQYNIHCDLSFDNL 998
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -3
Query: 214 GLVLYFSNYIFPKYSNNLKQCIL 146
GL++Y YIF + +C+L
Sbjct: 885 GLIVYLLKYIFTEGDPKFSKCVL 907
>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 313
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/30 (30%), Positives = 21/30 (70%)
Frame = -1
Query: 117 RISITHLVDNFFDRIIDDRNAEVDVLFSDA 28
R ++ L D+ ++ I+++ +AE+ +F+DA
Sbjct: 115 RFTVPVLWDSKYNTIVNNESAEIIRMFNDA 144
>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 22.2 bits (45), Expect = 9.5
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = +2
Query: 2 MYSE*NLQCASLNRTSTSAFRSSMMRSKKLSTKCVIEILARLKVFIFV 145
MY N CA L+ ST + M K+ C+I + + + V
Sbjct: 250 MYGIQNGFCAVLSTLSTFSNELHTMPIKRAYIYCIISVAISFSICVIV 297
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 87 FFDRIIDDRNAEVDV 43
F DR++D+ NAEV +
Sbjct: 699 FTDRLVDNLNAEVSL 713
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 22.2 bits (45), Expect = 9.5
Identities = 7/26 (26%), Positives = 17/26 (65%)
Frame = -1
Query: 150 YCTKIKTFKRARISITHLVDNFFDRI 73
Y ++ + + ++ + HLV++FF R+
Sbjct: 487 YMSESRCMIKYQLPLAHLVEDFFGRL 512
>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 22.2 bits (45), Expect = 9.5
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = +2
Query: 2 MYSE*NLQCASLNRTSTSAFRSSMMRSKKLSTKCVIEILARLKVFIFV 145
MY N CA L+ ST + M K+ C+I + + + V
Sbjct: 250 MYGIQNGFCAVLSTLSTFSNELHTMPIKRAYIYCIISVAISFSICVIV 297
>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
T-protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 214 GLVLYFSNYIFPKYSNN 164
G VL F ++I+PK SNN
Sbjct: 66 GRVL-FDSFIYPKVSNN 81
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 29 ASLNRTSTSAFRSSMMRSKKLST 97
+S++RTS S+FR S + + T
Sbjct: 74 SSMSRTSASSFRYSSPQKSSIDT 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 893,943
Number of Sequences: 5004
Number of extensions: 15359
Number of successful extensions: 43
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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