Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17c15
(498 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0202 - 1638978-1639571 75 2e-14
02_01_0158 - 1103461-1104186 75 4e-14
01_06_0926 + 33075575-33076618 31 0.39
03_01_0483 + 3689155-3689814 31 0.68
03_06_0157 - 32039020-32039175,32039267-32039338,32039478-320396... 30 1.2
05_02_0119 + 6793292-6793613,6795793-6795952,6796416-6796458,679... 29 2.1
04_04_1582 - 34590698-34591199,34593849-34594690 29 2.1
11_06_0416 + 23307984-23308281,23310083-23310900 28 3.6
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427... 28 3.6
01_06_0756 - 31731607-31731752,31732368-31732467,31732716-317329... 28 3.6
08_02_0503 - 17848739-17849004,17849109-17849268,17849368-178496... 28 4.8
08_01_0229 + 1834102-1834358,1834442-1834901 28 4.8
01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547 28 4.8
03_05_0737 + 27258320-27259007,27259263-27259435,27262684-272627... 27 6.3
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008 27 8.4
09_02_0515 + 10121849-10122149,10132151-10132187,10132314-101327... 27 8.4
08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160 27 8.4
07_03_0592 + 19805647-19805817,19805960-19806332,19807347-19807474 27 8.4
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 27 8.4
02_03_0120 + 15463163-15465250 27 8.4
>08_01_0202 - 1638978-1639571
Length = 197
Score = 75.4 bits (177), Expect = 2e-14
Identities = 43/104 (41%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Frame = +3
Query: 186 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 365
+E+V GTVKWF+ G+GFI +D ED+FVHQ+++ + RS+ DG+ VEF+V +
Sbjct: 3 SERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSD----GYRSLNDGDVVEFSVGS 58
Query: 366 GEKG-FEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGR 494
G G +A VT PGG + G + G R Y GGGR
Sbjct: 59 GNDGRTKAVDVTAPGGGALTGGSRPSG---GGDRGYGGGGGGGR 99
>02_01_0158 - 1103461-1104186
Length = 241
Score = 74.5 bits (175), Expect = 4e-14
Identities = 46/105 (43%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Frame = +3
Query: 186 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 365
A + GTVKWFN G+GFI+ +D ED+FVHQ++I + RS+ +GE VEFA+
Sbjct: 4 AARHRGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKAD----GFRSLAEGEQVEFAISE 59
Query: 366 GEKG-FEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRG 497
E G +A VTGP G VKG A G + R GGG G
Sbjct: 60 SEDGRTKAVDVTGPDGSFVKG---GAGGGGGGGGGFGSRGGGGSG 101
>01_06_0926 + 33075575-33076618
Length = 347
Score = 31.5 bits (68), Expect = 0.39
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = +3
Query: 330 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRG 497
GDG + V G G +AA G G +PV+G +D RG P +GG G
Sbjct: 62 GDGGGAD-PVRGGAGGSDAARGDGGGADPVRGGAGGSDAARGDGGGADPVRGGAGG 116
Score = 29.1 bits (62), Expect = 2.1
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +3
Query: 330 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRG 497
GDG + V G G +AA G G +PV+G +D G P + GG G
Sbjct: 82 GDGGGAD-PVRGGAGGSDAARGDGGGADPVRGGAGGSDAACGVCGGADPVRSGGSG 136
>03_01_0483 + 3689155-3689814
Length = 219
Score = 30.7 bits (66), Expect = 0.68
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = +3
Query: 330 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRG 497
GDG + V G +AA G G +PV+GS +D RG P +GG G
Sbjct: 81 GDGGGAD-PVRGSAGGSDAARGDGGGADPVRGSAGGSDAARGDGGGADPVRGGAGG 135
Score = 29.1 bits (62), Expect = 2.1
Identities = 21/56 (37%), Positives = 26/56 (46%)
Frame = +3
Query: 330 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRG 497
GDG A AG G +AA G G +PV+GS +D RG P +G G
Sbjct: 62 GDGGADPVRGSAG--GSDAARGDGGGADPVRGSAGGSDAARGDGGGADPVRGSAGG 115
>03_06_0157 -
32039020-32039175,32039267-32039338,32039478-32039602,
32039678-32040559,32040623-32040692,32041248-32041739,
32041985-32042044,32042541-32042618,32043322-32044344
Length = 985
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 336 GEAVEFAVVAGEKGFEAAGVTGPGGEPVKG 425
GE+ E ++ GE E V GPGGEP G
Sbjct: 388 GESKEDEIIEGEPDPEMEVVAGPGGEPKVG 417
>05_02_0119 +
6793292-6793613,6795793-6795952,6796416-6796458,
6797015-6797335
Length = 281
Score = 29.1 bits (62), Expect = 2.1
Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 13/94 (13%)
Frame = +3
Query: 213 WFNVKSGYGF-INRNDTKEDVFVHQTAIARNNPRKAVRSVGDGE--------AVEFAVVA 365
W NV SG R +E V R +P +A + G E VA
Sbjct: 8 WINVSSGLDSGRQRGRRREGALVAWGGAQRTSPVEAAARMESGGWHRRTSMIVREELEVA 67
Query: 366 GE----KGFEAAGVTGPGGEPVKGSPYAADKRRG 455
G+ G EA G +GPGGE D RRG
Sbjct: 68 GDGRRASGVEAPGGSGPGGERTMAPANIDDSRRG 101
>04_04_1582 - 34590698-34591199,34593849-34594690
Length = 447
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 330 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 452
GDG E + G+KG G G GG KGS ++++ R
Sbjct: 229 GDGGVEEGSAGGGKKGGGGGGGGGGGGHGEKGSAKSSEQER 269
>11_06_0416 + 23307984-23308281,23310083-23310900
Length = 371
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 486 HLDEGNIGGGSHGACLQHKVSLLLAHH 406
HLD+ N+ G +G + K+SLL A H
Sbjct: 89 HLDDPNVDGVRNGVRARFKISLLAAAH 115
>03_06_0609 -
35042276-35042388,35042476-35042527,35042624-35042725,
35043546-35043745,35045258-35045336,35045541-35045595,
35045947-35046122,35046386-35046988,35047077-35047265,
35048150-35048201,35048289-35048356,35048873-35048911,
35048912-35048970,35049639-35049782,35050136-35050238,
35050368-35050467,35050596-35050612
Length = 716
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 401 TSNTSCFKAFLPGNHGKLHRLSVADRAHSLTWVVTGDGSLMHK 273
T N ++ FLP G + L + D ++ W ++ + SL HK
Sbjct: 293 TENDCAWQRFLPS--GPIALLPIGDNYSNIVWTMSPEESLRHK 333
>01_06_0756 -
31731607-31731752,31732368-31732467,31732716-31732943,
31733390-31733474,31733583-31733662,31733755-31733826,
31733964-31734058,31735442-31735523,31735646-31735927
Length = 389
Score = 28.3 bits (60), Expect = 3.6
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = +3
Query: 180 VIAEKVSGTVKWFNVKSGYGF--INRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEF 353
+++EK GT +V+S + +N N + ED+ HQ A+ + +S G G+ +
Sbjct: 281 MVSEKNGGTD---SVESAFDNENVNSNISHEDMHQHQKVNAKGGRKGRYKSQGRGQIQQN 337
Query: 354 AVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGY 458
G A + +P+ G P D RG+
Sbjct: 338 TSGQGHVSSPATSGSDHVNKPIPG-PRMPDGTRGF 371
>08_02_0503 -
17848739-17849004,17849109-17849268,17849368-17849691,
17849787-17850209
Length = 390
Score = 27.9 bits (59), Expect = 4.8
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +3
Query: 255 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKG 425
D +D + + A A NP A R G +A + + + G++ AGV G VKG
Sbjct: 106 DIADDQVLVRVAAAALNPVDAKRRAGKFKATD-SPLPTVPGYDVAGVVVKAGRKVKG 161
>08_01_0229 + 1834102-1834358,1834442-1834901
Length = 238
Score = 27.9 bits (59), Expect = 4.8
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2
Query: 83 GVIGERRWWQRW 48
GV+GERR W+RW
Sbjct: 134 GVVGERRRWRRW 145
>01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547
Length = 388
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/38 (44%), Positives = 17/38 (44%)
Frame = +3
Query: 318 VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSP 431
VR G G A FAV G A G GGEP SP
Sbjct: 53 VRGGGGGGAALFAVPRLFVGLAAKRGAGDGGEPASRSP 90
>03_05_0737 +
27258320-27259007,27259263-27259435,27262684-27262758,
27262832-27263296
Length = 466
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 366 GEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYFPRQGGGRG 497
G +G++ G G GG + G Y + G Y +GGG G
Sbjct: 367 GRRGYQNGGRGGRGGRGMGGGGYQNGRGGGGGGGYQNGRGGGEG 410
>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
Length = 1058
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 419 YWLTTGTSNTSCFKAFLPGNHGKLHRLSVADRAHS 315
+ + +NTS LPG+ GKLHRL + D ++
Sbjct: 102 FLIVLNLANTS-LTGTLPGDIGKLHRLELLDLGYN 135
>09_02_0515 +
10121849-10122149,10132151-10132187,10132314-10132790,
10133184-10133733
Length = 454
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 195 VSGTVKWFNVKSGYGFINRNDTKE 266
V+ VKW +KSG F N KE
Sbjct: 195 VAAAVKWLKIKSGQAFAVENYVKE 218
>08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160
Length = 749
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Frame = +3
Query: 279 HQTAIARNNPRKAVRSVGDGEA----VEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADK 446
HQ + P+ S DG A +E + G E+ G G GG P +
Sbjct: 29 HQQHQHQLPPQATTTSESDGRAPRDELEMSKSGGSDNLESGGGGGGGGSGGDQDPNQRPR 88
Query: 447 RRGYHR 464
++ YHR
Sbjct: 89 KKRYHR 94
>07_03_0592 + 19805647-19805817,19805960-19806332,19807347-19807474
Length = 223
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +3
Query: 285 TAIARNNPRKAVRSVGDGEAVEFAVVAG 368
TAI N AV +VGD AV F V AG
Sbjct: 68 TAILINGETLAVANVGDSRAVAFDVRAG 95
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +3
Query: 441 DKRRGYHRQY-FPRQGGGRG 497
D RRGY Y +PR GGG+G
Sbjct: 8 DPRRGYDGGYGYPRGGGGQG 27
>02_03_0120 + 15463163-15465250
Length = 695
Score = 27.1 bits (57), Expect = 8.4
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +3
Query: 288 AIARNNPRKAVRSVGDGEAVEFAVVA--GEKGFEAAGVTGPGG 410
++ R N AV S GEA VA KGF++ V G GG
Sbjct: 357 SVRRKNQEHAVASEDMGEATLSMEVARAATKGFDSGNVIGVGG 399
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,362,937
Number of Sequences: 37544
Number of extensions: 247393
Number of successful extensions: 1052
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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