Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17c13
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    28   0.93 
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    26   3.7  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.5  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   8.6  

>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +1

Query: 310 SGARQVIGRLRRRNLISTWGGNQSSVDILIKPNVVENITRVFKRESIDYNVV 465
           S A  + G L+  NLI+ W  N+ ++D     +  E++ + F  E+  +N+V
Sbjct: 171 SEACSLAGHLKLSNLIAVWDNNKITIDGATSMSFDEDVEKRF--EAYGWNIV 220


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 379 SSVDILIKPNVVENITRVFKRESIDYNVVIEDLQKRINEGK 501
           S  ++L+       I+ +F+ + I    V+E+LQ RINEG+
Sbjct: 108 SEANLLLLTQFYGKISSLFRSKIIQ---VLEELQSRINEGE 145


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 267 NFFRLMIAFNCFRYYYCIFNN 205
           NFF L ++  C  YY+ + NN
Sbjct: 264 NFFPLFLSILCVGYYHHLLNN 284


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 386  TED*FPPHVEIRFLRRSLP 330
            TE   P HV I FLR+ LP
Sbjct: 1214 TEGILPEHVRIPFLRKCLP 1232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,344,582
Number of Sequences: 5004
Number of extensions: 42316
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)