Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17c13
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0491 + 3506425-3506427,3506610-3506810,3507517-3507732           30   1.7  
06_01_0465 - 3304417-3306834                                           29   3.8  
12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837           28   6.7  
05_03_0414 + 13650483-13651388,13651559-13651657                       28   6.7  
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535...    27   8.9  
11_08_0004 + 27518384-27519018,27519147-27519397,27520437-275205...    27   8.9  
07_03_0587 + 19708841-19709282,19709693-19709883,19710429-197105...    27   8.9  

>06_01_0491 + 3506425-3506427,3506610-3506810,3507517-3507732
          Length = 139

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 355 ISTWGGNQS-SVDILIKPNVVENIT 426
           I  WGGN   SVDI + PN ++N+T
Sbjct: 8   IGPWGGNGGGSVDISVPPNSLKNVT 32


>06_01_0465 - 3304417-3306834
          Length = 805

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 235 TIERDHEPKKIDYSGSQVWQVSTTKSGA 318
           T  +D     +DY+G+ VW  +TT +GA
Sbjct: 98  TFRKDGGLALVDYNGTVVWSTNTTATGA 125


>12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837
          Length = 364

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 375 SVFCGHPYQTECRRKYYTCFQKREHRLQRRD 467
           SV C   + + C  K  TC Q  E RL RRD
Sbjct: 234 SVRCMTDHDSACLFKILTCEQSCEKRLMRRD 264


>05_03_0414 + 13650483-13651388,13651559-13651657
          Length = 334

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 375 SVFCGHPYQTECRRKYYTCFQKREHRLQRRD 467
           SV C   + + C  K  TC Q  E RL RRD
Sbjct: 205 SVRCMQDHDSACLFKILTCEQNCEKRLLRRD 235


>11_08_0007 +
           27551173-27551828,27552071-27552282,27553371-27553550,
           27555154-27556187
          Length = 693

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 140 ATGCLTELRCGHSSPGCSSLIRGELRT 60
           A GC   L C HS+ G  S++ G++++
Sbjct: 512 AVGCAEALACMHSNIGHKSVVHGDVKS 538


>11_08_0004 +
           27518384-27519018,27519147-27519397,27520437-27520559,
           27523499-27524529
          Length = 679

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 140 ATGCLTELRCGHSSPGCSSLIRGELRT 60
           A GC   L C HS+ G  S++ G++++
Sbjct: 498 AVGCAEALACMHSNIGHKSVVHGDVKS 524


>07_03_0587 + 19708841-19709282,19709693-19709883,19710429-19710568,
            19710955-19711380,19711540-19712685,19712805-19712934,
            19713257-19713492,19713575-19713710,19713793-19713869,
            19714692-19714798,19714896-19714996
          Length = 1043

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 367  GGNQSSVDILIKPNVVENITRVFKRESIDYNVVIEDLQK 483
            G    S + L   NVV++IT + K   + +NV +E +++
Sbjct: 985  GNVNDSDESLWLDNVVKSITNIAKTHGLSWNVTVEHVER 1023


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,279,785
Number of Sequences: 37544
Number of extensions: 273308
Number of successful extensions: 761
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)