Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17c13
(613 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY061884-1|AAL32101.1| 1755|Homo sapiens ubiquitin ligase E3 alp... 36 0.11
AL391814-3|CAI14738.1| 1755|Homo sapiens ubiquitin protein ligas... 36 0.11
AL391814-2|CAI95298.1| 1755|Homo sapiens ubiquitin protein ligas... 36 0.11
AL136223-3|CAI19920.1| 1755|Homo sapiens ubiquitin protein ligas... 36 0.11
AL136223-2|CAI95666.1| 1755|Homo sapiens ubiquitin protein ligas... 36 0.11
AL049843-4|CAI20399.1| 1755|Homo sapiens ubiquitin protein ligas... 36 0.11
AL049843-3|CAI95685.1| 1755|Homo sapiens ubiquitin protein ligas... 36 0.11
AB002347-1|BAA20806.1| 1275|Homo sapiens KIAA0349 protein. 36 0.11
BC039362-1|AAH39362.1| 436|Homo sapiens CPA5 protein protein. 30 7.4
BC033684-1|AAH33684.1| 437|Homo sapiens carboxypeptidase A6 pro... 30 7.4
AY155230-1|AAO17156.1| 436|Homo sapiens carboxypeptidase A5 pro... 30 7.4
AF221594-1|AAF91231.1| 315|Homo sapiens carboxypeptidase B prec... 30 7.4
AF334812-1|AAK20892.1| 653|Homo sapiens Rab11 interacting prote... 29 9.8
AF153085-1|AAF34356.1| 549|Homo sapiens phosphoprotein pp75 pro... 29 9.8
AC010913-1|AAX88900.1| 522|Homo sapiens unknown protein. 29 9.8
AB020664-1|BAA74880.1| 733|Homo sapiens KIAA0857 protein protein. 29 9.8
>AY061884-1|AAL32101.1| 1755|Homo sapiens ubiquitin ligase E3 alpha-II
protein.
Length = 1755
Score = 35.9 bits (79), Expect = 0.11
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 351 PDFYMGRESVFCGHPYQTECRRKYYTCFQKREHRLQRRDRRFTKED 488
PD G + CGH C ++Y+ Q +E R Q+R R T D
Sbjct: 1157 PDLSCGTHTSSCGHIMHAHCWQRYFDSVQAKEQRRQQRLRLHTSYD 1202
>AL391814-3|CAI14738.1| 1755|Homo sapiens ubiquitin protein ligase E3
component n-recognin 2 protein.
Length = 1755
Score = 35.9 bits (79), Expect = 0.11
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 351 PDFYMGRESVFCGHPYQTECRRKYYTCFQKREHRLQRRDRRFTKED 488
PD G + CGH C ++Y+ Q +E R Q+R R T D
Sbjct: 1157 PDLSCGTHTSSCGHIMHAHCWQRYFDSVQAKEQRRQQRLRLHTSYD 1202
>AL391814-2|CAI95298.1| 1755|Homo sapiens ubiquitin protein ligase E3
component n-recognin 2 protein.
Length = 1755
Score = 35.9 bits (79), Expect = 0.11
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 351 PDFYMGRESVFCGHPYQTECRRKYYTCFQKREHRLQRRDRRFTKED 488
PD G + CGH C ++Y+ Q +E R Q+R R T D
Sbjct: 1157 PDLSCGTHTSSCGHIMHAHCWQRYFDSVQAKEQRRQQRLRLHTSYD 1202
>AL136223-3|CAI19920.1| 1755|Homo sapiens ubiquitin protein ligase E3
component n-recognin 2 protein.
Length = 1755
Score = 35.9 bits (79), Expect = 0.11
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 351 PDFYMGRESVFCGHPYQTECRRKYYTCFQKREHRLQRRDRRFTKED 488
PD G + CGH C ++Y+ Q +E R Q+R R T D
Sbjct: 1157 PDLSCGTHTSSCGHIMHAHCWQRYFDSVQAKEQRRQQRLRLHTSYD 1202
>AL136223-2|CAI95666.1| 1755|Homo sapiens ubiquitin protein ligase E3
component n-recognin 2 protein.
Length = 1755
Score = 35.9 bits (79), Expect = 0.11
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 351 PDFYMGRESVFCGHPYQTECRRKYYTCFQKREHRLQRRDRRFTKED 488
PD G + CGH C ++Y+ Q +E R Q+R R T D
Sbjct: 1157 PDLSCGTHTSSCGHIMHAHCWQRYFDSVQAKEQRRQQRLRLHTSYD 1202
>AL049843-4|CAI20399.1| 1755|Homo sapiens ubiquitin protein ligase E3
component n-recognin 2 protein.
Length = 1755
Score = 35.9 bits (79), Expect = 0.11
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 351 PDFYMGRESVFCGHPYQTECRRKYYTCFQKREHRLQRRDRRFTKED 488
PD G + CGH C ++Y+ Q +E R Q+R R T D
Sbjct: 1157 PDLSCGTHTSSCGHIMHAHCWQRYFDSVQAKEQRRQQRLRLHTSYD 1202
>AL049843-3|CAI95685.1| 1755|Homo sapiens ubiquitin protein ligase E3
component n-recognin 2 protein.
Length = 1755
Score = 35.9 bits (79), Expect = 0.11
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 351 PDFYMGRESVFCGHPYQTECRRKYYTCFQKREHRLQRRDRRFTKED 488
PD G + CGH C ++Y+ Q +E R Q+R R T D
Sbjct: 1157 PDLSCGTHTSSCGHIMHAHCWQRYFDSVQAKEQRRQQRLRLHTSYD 1202
>AB002347-1|BAA20806.1| 1275|Homo sapiens KIAA0349 protein.
Length = 1275
Score = 35.9 bits (79), Expect = 0.11
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 351 PDFYMGRESVFCGHPYQTECRRKYYTCFQKREHRLQRRDRRFTKED 488
PD G + CGH C ++Y+ Q +E R Q+R R T D
Sbjct: 677 PDLSCGTHTSSCGHIMHAHCWQRYFDSVQAKEQRRQQRLRLHTSYD 722
>BC039362-1|AAH39362.1| 436|Homo sapiens CPA5 protein protein.
Length = 436
Score = 29.9 bits (64), Expect = 7.4
Identities = 18/87 (20%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Frame = +1
Query: 262 KIDYSGSQVWQVSTTKSGARQVIGRLR--RRNLISTWGGNQSS---VDILIKPNVVENIT 426
+++++G QV +V ++G L + + W G VD+ + + +++I
Sbjct: 34 QMNFTGDQVLRVLAKDEKQLSLLGDLEGLKPQKVDFWRGPARPSLPVDMRVPFSELKDIK 93
Query: 427 RVFKRESIDYNVVIEDLQKRINEGKSA 507
+ + Y+++I+D+Q ++EG+ A
Sbjct: 94 AYLESHGLAYSIMIKDIQVLLDEGRQA 120
>BC033684-1|AAH33684.1| 437|Homo sapiens carboxypeptidase A6
protein.
Length = 437
Score = 29.9 bits (64), Expect = 7.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 388 DILIKPNVVENITRVFKRESIDYNVVIEDLQKRINEGKS 504
D+ I N + + +I Y V+IEDLQK + +G S
Sbjct: 83 DVHIPQNGSRALLAFLQEANIQYKVLIEDLQKTLEKGSS 121
>AY155230-1|AAO17156.1| 436|Homo sapiens carboxypeptidase A5
protein.
Length = 436
Score = 29.9 bits (64), Expect = 7.4
Identities = 18/87 (20%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Frame = +1
Query: 262 KIDYSGSQVWQVSTTKSGARQVIGRLR--RRNLISTWGGNQSS---VDILIKPNVVENIT 426
+++++G QV +V ++G L + + W G VD+ + + +++I
Sbjct: 34 QMNFTGDQVLRVLAKDEKQLSLLGDLEGLKPQKVDFWRGPARPSLPVDMRVPFSELKDIK 93
Query: 427 RVFKRESIDYNVVIEDLQKRINEGKSA 507
+ + Y+++I+D+Q ++EG+ A
Sbjct: 94 AYLESHGLAYSIMIKDIQVLLDEGRQA 120
>AF221594-1|AAF91231.1| 315|Homo sapiens carboxypeptidase B
precursor protein.
Length = 315
Score = 29.9 bits (64), Expect = 7.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 388 DILIKPNVVENITRVFKRESIDYNVVIEDLQKRINEGKS 504
D+ I N + + +I Y V+IEDLQK + +G S
Sbjct: 83 DVHIPQNGSRALLAFLQEANIQYKVLIEDLQKTLEKGSS 121
>AF334812-1|AAK20892.1| 653|Homo sapiens Rab11 interacting protein
Rip11a protein.
Length = 653
Score = 29.5 bits (63), Expect = 9.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 107 HSSPGCSSLIRGELRTTVRAAKNNTTVCLLD 15
HS PG RGE+ T++ +NN + + D
Sbjct: 149 HSKPGKKEKERGEIEVTIQFTRNNLSASMFD 179
>AF153085-1|AAF34356.1| 549|Homo sapiens phosphoprotein pp75
protein.
Length = 549
Score = 29.5 bits (63), Expect = 9.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 107 HSSPGCSSLIRGELRTTVRAAKNNTTVCLLD 15
HS PG RGE+ T++ +NN + + D
Sbjct: 45 HSKPGKKEKERGEIEVTIQFTRNNLSASMFD 75
>AC010913-1|AAX88900.1| 522|Homo sapiens unknown protein.
Length = 522
Score = 29.5 bits (63), Expect = 9.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 107 HSSPGCSSLIRGELRTTVRAAKNNTTVCLLD 15
HS PG RGE+ T++ +NN + + D
Sbjct: 149 HSKPGKKEKERGEIEVTIQFTRNNLSASMFD 179
>AB020664-1|BAA74880.1| 733|Homo sapiens KIAA0857 protein protein.
Length = 733
Score = 29.5 bits (63), Expect = 9.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 107 HSSPGCSSLIRGELRTTVRAAKNNTTVCLLD 15
HS PG RGE+ T++ +NN + + D
Sbjct: 229 HSKPGKKEKERGEIEVTIQFTRNNLSASMFD 259
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,109,781
Number of Sequences: 237096
Number of extensions: 1398974
Number of successful extensions: 3193
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3184
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6522878360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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