Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17c11
(524 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC002546-1|AAH02546.2| 97|Homo sapiens coiled-coil-helix-coile... 78 2e-14
BC110420-1|AAI10421.1| 90|Homo sapiens COX19 cytochrome c oxid... 32 1.4
BC103632-1|AAI03633.1| 90|Homo sapiens COX19 cytochrome c oxid... 32 1.4
BC070383-1|AAH70383.1| 90|Homo sapiens COX19 cytochrome c oxid... 32 1.4
AY957566-1|AAY35062.1| 90|Homo sapiens COX19 protein. 32 1.4
AF283408-1|AAL38109.1| 1537|Homo sapiens candidate tumor suppres... 31 1.9
AF176832-1|AAF70379.1| 4599|Homo sapiens low density lipoprotein... 31 1.9
AC068195-1|AAX93243.1| 1126|Homo sapiens unknown protein. 31 1.9
AB209707-1|BAD92944.1| 1720|Homo sapiens low density lipoprotein... 31 1.9
BC116455-1|AAI16456.1| 125|Homo sapiens chromosome 1 open readi... 31 3.3
BC025793-1|AAH25793.1| 106|Homo sapiens C1orf31 protein protein. 31 3.3
AL355472-4|CAI22930.1| 79|Homo sapiens novel protein protein. 31 3.3
AL355472-3|CAI22929.1| 125|Homo sapiens novel protein protein. 31 3.3
AL355472-2|CAI22928.1| 155|Homo sapiens novel protein protein. 31 3.3
AY094972-1|AAM15734.1| 691|Homo sapiens rac-GTP binding protein... 30 5.7
AK022695-1|BAB14185.1| 511|Homo sapiens protein ( Homo sapiens ... 30 5.7
AJ496730-1|CAD43139.1| 691|Homo sapiens hypothetical protein pr... 30 5.7
BC068463-1|AAH68463.1| 667|Homo sapiens RHOT1 protein protein. 29 10.0
>BC002546-1|AAH02546.2| 97|Homo sapiens
coiled-coil-helix-coiled-coil-helix domain containing 7
protein.
Length = 97
Score = 77.8 bits (183), Expect = 2e-14
Identities = 27/67 (40%), Positives = 42/67 (62%)
Frame = +3
Query: 147 LNPCLTEQEQSYKCLDKNGFDHAKCEEYFENYNTCKKFWGKVYKDRKAKGIQPYLPEVEE 326
+NPCL+E + S +CLD+N +D +C YF Y C++FW + R+ G++P++P E
Sbjct: 25 INPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIVMQRRKNGVKPFMPTAAE 84
Query: 327 RKEIKAA 347
R EI A
Sbjct: 85 RDEILRA 91
>BC110420-1|AAI10421.1| 90|Homo sapiens COX19 cytochrome c oxidase
assembly homolog (S. cerevisiae) protein.
Length = 90
Score = 31.9 bits (69), Expect = 1.4
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 141 ERLNPCLTEQEQSYKCLDKNGFDHAKCEEYFENYNTCK 254
+ L C + +E+ KCL N F++A C + + Y C+
Sbjct: 25 DHLGECKSFKEKFMKCLHNNNFENALCRKESKEYLECR 62
>BC103632-1|AAI03633.1| 90|Homo sapiens COX19 cytochrome c oxidase
assembly homolog (S. cerevisiae) protein.
Length = 90
Score = 31.9 bits (69), Expect = 1.4
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 141 ERLNPCLTEQEQSYKCLDKNGFDHAKCEEYFENYNTCK 254
+ L C + +E+ KCL N F++A C + + Y C+
Sbjct: 25 DHLGECKSFKEKFMKCLHNNNFENALCRKESKEYLECR 62
>BC070383-1|AAH70383.1| 90|Homo sapiens COX19 cytochrome c oxidase
assembly homolog (S. cerevisiae) protein.
Length = 90
Score = 31.9 bits (69), Expect = 1.4
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 141 ERLNPCLTEQEQSYKCLDKNGFDHAKCEEYFENYNTCK 254
+ L C + +E+ KCL N F++A C + + Y C+
Sbjct: 25 DHLGECKSFKEKFMKCLHNNNFENALCRKESKEYLECR 62
>AY957566-1|AAY35062.1| 90|Homo sapiens COX19 protein.
Length = 90
Score = 31.9 bits (69), Expect = 1.4
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 141 ERLNPCLTEQEQSYKCLDKNGFDHAKCEEYFENYNTCK 254
+ L C + +E+ KCL N F++A C + + Y C+
Sbjct: 25 DHLGECKSFKEKFMKCLHNNNFENALCRKESKEYLECR 62
>AF283408-1|AAL38109.1| 1537|Homo sapiens candidate tumor suppressor
protein protein.
Length = 1537
Score = 31.5 bits (68), Expect = 1.9
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 129 NKNAERLNPCLTEQEQSYKCLDKNGFDHAKCEEYF-ENYNTC 251
N+ E LN CL S++C++ G C++ F E NTC
Sbjct: 1163 NRQCEDLNECLVFGTCSHQCINVEGSYKCVCDQNFQERNNTC 1204
>AF176832-1|AAF70379.1| 4599|Homo sapiens low density lipoprotein
receptor related protein-deleted in tumor protein.
Length = 4599
Score = 31.5 bits (68), Expect = 1.9
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 129 NKNAERLNPCLTEQEQSYKCLDKNGFDHAKCEEYF-ENYNTC 251
N+ E LN CL S++C++ G C++ F E NTC
Sbjct: 3839 NRQCEDLNECLVFGTCSHQCINVEGSYKCVCDQNFQERNNTC 3880
>AC068195-1|AAX93243.1| 1126|Homo sapiens unknown protein.
Length = 1126
Score = 31.5 bits (68), Expect = 1.9
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 129 NKNAERLNPCLTEQEQSYKCLDKNGFDHAKCEEYF-ENYNTC 251
N+ E LN CL S++C++ G C++ F E NTC
Sbjct: 697 NRQCEDLNECLVFGTCSHQCINVEGSYKCVCDQNFQERNNTC 738
>AB209707-1|BAD92944.1| 1720|Homo sapiens low density
lipoprotein-related protein 1B variant protein.
Length = 1720
Score = 31.5 bits (68), Expect = 1.9
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 129 NKNAERLNPCLTEQEQSYKCLDKNGFDHAKCEEYF-ENYNTC 251
N+ E LN CL S++C++ G C++ F E NTC
Sbjct: 960 NRQCEDLNECLVFGTCSHQCINVEGSYKCVCDQNFQERNNTC 1001
>BC116455-1|AAI16456.1| 125|Homo sapiens chromosome 1 open reading
frame 31 protein.
Length = 125
Score = 30.7 bits (66), Expect = 3.3
Identities = 12/45 (26%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +3
Query: 156 CLTEQEQSYKCLDKNGFDHAKCEEYFENY-NTCKKFWGKVYKDRK 287
C +++ +KCLD+N D ++C++ ++ ++C + W K + R+
Sbjct: 58 CWGARDEYWKCLDENLEDASQCKKLRSSFESSCPQQWIKYFDKRR 102
>BC025793-1|AAH25793.1| 106|Homo sapiens C1orf31 protein protein.
Length = 106
Score = 30.7 bits (66), Expect = 3.3
Identities = 12/45 (26%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +3
Query: 156 CLTEQEQSYKCLDKNGFDHAKCEEYFENY-NTCKKFWGKVYKDRK 287
C +++ +KCLD+N D ++C++ ++ ++C + W K + R+
Sbjct: 39 CWGARDEYWKCLDENLEDASQCKKLRSSFESSCPQQWIKYFDKRR 83
>AL355472-4|CAI22930.1| 79|Homo sapiens novel protein protein.
Length = 79
Score = 30.7 bits (66), Expect = 3.3
Identities = 12/45 (26%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +3
Query: 156 CLTEQEQSYKCLDKNGFDHAKCEEYFENY-NTCKKFWGKVYKDRK 287
C +++ +KCLD+N D ++C++ ++ ++C + W K + R+
Sbjct: 12 CWGARDEYWKCLDENLEDASQCKKLRSSFESSCPQQWIKYFDKRR 56
>AL355472-3|CAI22929.1| 125|Homo sapiens novel protein protein.
Length = 125
Score = 30.7 bits (66), Expect = 3.3
Identities = 12/45 (26%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +3
Query: 156 CLTEQEQSYKCLDKNGFDHAKCEEYFENY-NTCKKFWGKVYKDRK 287
C +++ +KCLD+N D ++C++ ++ ++C + W K + R+
Sbjct: 58 CWGARDEYWKCLDENLEDASQCKKLRSSFESSCPQQWIKYFDKRR 102
>AL355472-2|CAI22928.1| 155|Homo sapiens novel protein protein.
Length = 155
Score = 30.7 bits (66), Expect = 3.3
Identities = 12/45 (26%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +3
Query: 156 CLTEQEQSYKCLDKNGFDHAKCEEYFENY-NTCKKFWGKVYKDRK 287
C +++ +KCLD+N D ++C++ ++ ++C + W K + R+
Sbjct: 88 CWGARDEYWKCLDENLEDASQCKKLRSSFESSCPQQWIKYFDKRR 132
>AY094972-1|AAM15734.1| 691|Homo sapiens rac-GTP binding
protein-like protein protein.
Length = 691
Score = 29.9 bits (64), Expect = 5.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 306 TVVYPLLFCLCTLFPKTFCRCYNFRNTPRILRDQNHFY 193
T + L C+CT TFC C NF N+ + +N +
Sbjct: 610 TAFHARLRCMCTCNRCTFCICQNFLNSDLLQSVKNKIF 647
>AK022695-1|BAB14185.1| 511|Homo sapiens protein ( Homo sapiens
cDNA FLJ12633 fis, clone NT2RM4001856. ).
Length = 511
Score = 29.9 bits (64), Expect = 5.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 306 TVVYPLLFCLCTLFPKTFCRCYNFRNTPRILRDQNHFY 193
T + L C+CT TFC C NF N+ + +N +
Sbjct: 430 TAFHARLRCMCTCNRCTFCICQNFLNSDLLQSVKNKIF 467
>AJ496730-1|CAD43139.1| 691|Homo sapiens hypothetical protein
protein.
Length = 691
Score = 29.9 bits (64), Expect = 5.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 306 TVVYPLLFCLCTLFPKTFCRCYNFRNTPRILRDQNHFY 193
T + L C+CT TFC C NF N+ + +N +
Sbjct: 610 TAFHARLRCMCTCNRCTFCICQNFLNSDLLQSVKNKIF 647
>BC068463-1|AAH68463.1| 667|Homo sapiens RHOT1 protein protein.
Length = 667
Score = 29.1 bits (62), Expect = 10.0
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 288 LFCLCTLFPKTFCRCYNFRNTPRILRDQNHFYPNICKTV 172
L C+CT TFC C NF N+ + +N + + +
Sbjct: 626 LRCMCTCNRCTFCICQNFLNSDLLQSVKNKIFTAVLNRI 664
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,554,693
Number of Sequences: 237096
Number of extensions: 1208392
Number of successful extensions: 2538
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2538
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5046825278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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