Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17c09
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    27   2.5  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   3.3  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    26   4.4  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    26   4.4  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    25   5.8  
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha...    25   5.8  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.8  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    25   7.6  

>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +1

Query: 148 VTQMVNTTKHEDAHFDPDACPDDSEILTNGTVSLKPYAIFDWSESTQGLILSGFYYGY 321
           +  M++  K  +A+F P A       LT  TV    +   D +EST  L L G+   Y
Sbjct: 611 IQDMLHNKKLSNAYFVPRARATTCTTLTYVTVEPSHFQDEDCNESTNMLSLVGYMDSY 668


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 349 LAEKYGGKWTLGIGLLSTAIFTLMTPVVVKAGG-ATWLFILR 471
           + + Y    T+ +G + T + TL+TP   KAG   +++F+++
Sbjct: 626 ITDSYINHLTIFMGYIETVLKTLLTPASPKAGFIQSYIFLVK 667


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +1

Query: 232 NGTVSLKPYAIFDWSESTQGLILSGFYYGYAITHVPGGY 348
           NG +++  +A  +W +    L ++G   GY +  V  G+
Sbjct: 788 NGVLAMWKFATSNWDKLLSRLPVAGTMRGYVVRFVTSGF 826


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 208 PDDSEILTNGTVSLKPYAIFDWSESTQGL 294
           PDD +++ NG+ S+ P+ +     + +GL
Sbjct: 325 PDDPKLMGNGSASVSPFVLAIQEANIKGL 353


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +1

Query: 358 KYGGKWTLGIGLLSTAIFTLMTPVVVKAGGATWLFI 465
           +YG K  +GIGLLS   F   T          W  I
Sbjct: 582 RYGLKMAIGIGLLSIVAFQKSTAARYTLWNGQWSLI 617


>SPCC18.15 |||WD repeat protein, human WRDR85
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 94  GLLAVCNAYTMRVCL 138
           GLLA C+ Y  RVCL
Sbjct: 292 GLLATCSFYDKRVCL 306


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 467 KMNSQVAPPAFTTTGVMSVK 408
           K ++++A PAF TTG + +K
Sbjct: 712 KQHTEIAQPAFNTTGTVLMK 731


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 208 PDDSEILTNGTVSLKPYAIFDWSESTQGL 294
           PDD  ++ NG+ S+ P+ +     + +GL
Sbjct: 325 PDDPNLMGNGSTSVSPFVLAIKEANIKGL 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,104
Number of Sequences: 5004
Number of extensions: 54688
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)