Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17c09
(560 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672... 67 8e-12
01_01_1227 + 9912646-9913056,9913306-9913413,9913517-9913672,991... 62 2e-10
09_06_0242 - 21806370-21806483,21806574-21806660,21806865-218069... 60 9e-10
01_06_1363 - 36681605-36681789,36681875-36681908,36682017-366821... 50 2e-06
05_05_0059 + 22011168-22011662,22012668-22012894,22013029-220133... 49 3e-06
11_01_0557 + 4394754-4396040 48 7e-06
12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106 37 0.010
08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907 28 4.4
01_05_0726 - 24630080-24630778,24630899-24631011,24631088-246311... 27 7.7
>09_06_0351 +
22466160-22466217,22466514-22467052,22467186-22467293,
22467391-22467546,22467916-22468131,22468639-22468776,
22468880-22468981,22469089-22469146,22469346-22469408,
22469543-22469640
Length = 511
Score = 67.3 bits (157), Expect = 8e-12
Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = +1
Query: 232 NGTVSLKPYAI-FDWSESTQGLILSGFYYGYAITHVPGGYLAEKYGGKWTLGIGLLSTAI 408
N ++++ P + F WS +T GLI S F++GY +T + GG A+++GGK LG G++ +I
Sbjct: 201 NMSIAILPMSSEFGWSPATVGLIQSSFFWGYLLTQILGGIWADRFGGKVVLGFGVVWWSI 260
Query: 409 FTLMTPVVVKAGGATWLFILRVLQRNG*G 495
T++TP+ K G +L ++R G G
Sbjct: 261 ATVLTPLAAKI-GLPFLLVMRAFMGIGEG 288
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +2
Query: 476 YKGMGEGPTMPALMIVLARWVPPHERSR 559
+ G+GEG MPA+ +L++WVP ERSR
Sbjct: 282 FMGIGEGVAMPAMNNILSKWVPVSERSR 309
>01_01_1227 +
9912646-9913056,9913306-9913413,9913517-9913672,
9914110-9914325,9914436-9914645,9914722-9914859,
9915076-9915177,9915508-9915603
Length = 478
Score = 62.5 bits (145), Expect = 2e-10
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Frame = +1
Query: 232 NGTVSLKPY-AIFDWSESTQGLILSGFYYGYAITHVPGGYLAEKYGGKWTLGIGLLSTAI 408
N ++++ P A F W+ T GLI S F++GY +T + GG A+ GGK LG G++ +I
Sbjct: 139 NMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQIAGGIWADTVGGKTVLGFGVIWWSI 198
Query: 409 FTLMTPVVVKAGGATWLFILRVLQRNG*G 495
T +TP K G +L + R G G
Sbjct: 199 ATALTPFAAKL-GLPFLLVTRAFMGVGEG 226
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +2
Query: 476 YKGMGEGPTMPALMIVLARWVPPHERSR 559
+ G+GEG MPA+ +L++WVP ERSR
Sbjct: 220 FMGVGEGVAMPAMNNILSKWVPVSERSR 247
>09_06_0242 -
21806370-21806483,21806574-21806660,21806865-21806917,
21806999-21807140,21807406-21807501,21808617-21808785,
21808859-21808939,21809032-21809106,21810322-21810387,
21811013-21811158,21811898-21812344
Length = 491
Score = 60.5 bits (140), Expect = 9e-10
Identities = 23/56 (41%), Positives = 41/56 (73%)
Frame = +1
Query: 265 FDWSESTQGLILSGFYYGYAITHVPGGYLAEKYGGKWTLGIGLLSTAIFTLMTPVV 432
+ W+ ST GL+ S F++GYA++ +PGG+LA+ +GG+ L IG+++ ++ T + P V
Sbjct: 163 YGWNSSTAGLVQSSFFWGYALSQLPGGWLAKLFGGRRVLEIGVVAWSLATAIIPAV 218
>01_06_1363 -
36681605-36681789,36681875-36681908,36682017-36682154,
36682578-36682724,36682821-36682865,36683043-36683331,
36683443-36683669,36684109-36684528
Length = 494
Score = 49.6 bits (113), Expect = 2e-06
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = +1
Query: 205 CPDDSEILTNGTVSLKPYAIFDWSESTQGLILSGFYYGYAITHVPGGYLAEKYGGKWTLG 384
C D +++ V L + W+ S G++ S F +GY ++ + GG L + YGGK +
Sbjct: 111 CNADRVVMSVAIVPLSQ--AYGWTPSFAGVVQSSFLWGYLVSPIIGGALVDYYGGKRVMA 168
Query: 385 IGLLSTAIFTLMTPVVVKAGGATWLFI-LRVL 477
G+ ++ T ++P A + WLF+ RVL
Sbjct: 169 YGVALWSLATFLSPWA--AARSLWLFLSTRVL 198
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 482 GMGEGPTMPALMIVLARWVPPHERS 556
GM EG +P++ ++ RW P ERS
Sbjct: 200 GMAEGVALPSMNNMVLRWFPRTERS 224
>05_05_0059 +
22011168-22011662,22012668-22012894,22013029-22013377,
22013464-22013508,22013589-22013735,22013851-22013988,
22014126-22014159,22014258-22014430
Length = 535
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +1
Query: 238 TVSLKPYAI-FDWSESTQGLILSGFYYGYAITHVPGGYLAEKYGGKWTLGIGLLSTAIFT 414
+V++ P+A + WS S G++ S F +GY + + GG LA++YGGK + ++ T
Sbjct: 144 SVAVVPFAAQYGWSSSFLGIVQSSFLWGYVFSSMVGGALADRYGGKKVMAGAAALWSLAT 203
Query: 415 LMTP 426
+TP
Sbjct: 204 FLTP 207
Score = 29.5 bits (63), Expect = 1.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 482 GMGEGPTMPALMIVLARWVPPHERS 556
G+ EG P + L +W P HER+
Sbjct: 225 GLAEGVAFPTMSTFLPKWFPTHERA 249
>11_01_0557 + 4394754-4396040
Length = 428
Score = 47.6 bits (108), Expect = 7e-06
Identities = 21/53 (39%), Positives = 37/53 (69%)
Frame = +1
Query: 274 SESTQGLILSGFYYGYAITHVPGGYLAEKYGGKWTLGIGLLSTAIFTLMTPVV 432
+++ +G+ILS FYYGY ++ +PGG+ A++ GG+ L LLS +++ + VV
Sbjct: 41 NQANKGMILSMFYYGYVLSQIPGGWAAQRLGGRLVL---LLSFVLWSSICAVV 90
Score = 35.9 bits (79), Expect = 0.022
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +2
Query: 482 GMGEGPTMPALMIVLARWVPPHERSR 559
G+ +G P++ VLA+WVPP ERSR
Sbjct: 108 GVAQGLIFPSIHTVLAQWVPPQERSR 133
>12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106
Length = 427
Score = 37.1 bits (82), Expect = 0.010
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 476 YKGMGEGPTMPALMIVLARWVPPHERSR 559
+ G+ +G PA+ VLA+WVPP ERSR
Sbjct: 100 FVGVAQGFIFPAIHTVLAQWVPPQERSR 127
>08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907
Length = 794
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 384 NRSSEYSYLHAHDARSCESWGSYLAIHFESITKEW 488
+RSS+ S +A S S YL +HFE+ EW
Sbjct: 519 SRSSDISCDNAQGINSLASIDKYLELHFEAEMVEW 553
>01_05_0726 -
24630080-24630778,24630899-24631011,24631088-24631169,
24631248-24631337,24631412-24631469,24631661-24631756,
24631835-24631908,24632006-24632068,24634111-24634320,
24634869-24635048
Length = 554
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 395 RRPIPKVHFPPYFSAKYPPGT 333
R P+P FP Y ++PPGT
Sbjct: 509 RPPMPPQQFPMYGDQQFPPGT 529
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,484,661
Number of Sequences: 37544
Number of extensions: 388895
Number of successful extensions: 1121
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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