Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17c09
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.098
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   3.7  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   6.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   6.4  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   6.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   6.4  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   8.5  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 27.5 bits (58), Expect = 0.098
 Identities = 28/128 (21%), Positives = 48/128 (37%)
 Frame = +1

Query: 49  SRLFLIPQRYVLGIMGLLAVCNAYTMRVCLNLAVTQMVNTTKHEDAHFDPDACPDDSEIL 228
           S+  L P  Y+  +   ++VC  +     +   +  +V      D+   P   P      
Sbjct: 294 SQASLPPVSYLKAVDAFMSVCTVFVFMALMEYCLVNIVLG----DSDTPPKPAPPPPPPS 349

Query: 229 TNGTVSLKPYAIFDWSESTQGLILSGFYYGYAITHVPGGYLAEKYGGKWTLGIGLLSTAI 408
           ++G  S K   IFD +     ++LSG          PG   A+K   +  L I  +S   
Sbjct: 350 SSGPDSAKLDKIFDIATKENAMLLSGRSQKSTTGPPPGPTPAQKARMR-ALNIDRVSRVF 408

Query: 409 FTLMTPVV 432
           F  +  V+
Sbjct: 409 FPFLFAVL 416


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 294 DTQRVLLWIRYNSCPWRILGGKIRREMDFGNRSS 395
           D +  L  I++N+C  RI   +I ++   GN  S
Sbjct: 286 DLEEPLTTIQHNNCLTRIPSTRINKQHTRGNNFS 319


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 545  GVEPIEPVLSSEPALLDPHPF 483
            G +P   V S +P + DP PF
Sbjct: 972  GCQPGGVVQSQQPIMTDPSPF 992


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +1

Query: 217 SEILTNGTVSLKPYAIFDWSESTQGLILSGFYYGYAITHVPGGYLAEKYGGKWTLGIGLL 396
           SE + NG   L+PY  + W+        SG    Y I         +K+   W L  GL+
Sbjct: 98  SEKIGNGGCLLQPYPDWSWANYKD---CSGIVSAYKIA-------IDKFDRLWVLDSGLI 147

Query: 397 S 399
           +
Sbjct: 148 N 148


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +3

Query: 261 YIRLVRINARPDTQRVLLWIRYNSCPWRILGGKI 362
           Y     +  RPDT+ + L   Y  CP+     ++
Sbjct: 142 YSLYTAVITRPDTKFIQLPPLYEMCPYFFFNSEV 175


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +3

Query: 261 YIRLVRINARPDTQRVLLWIRYNSCPWRILGGKI 362
           Y     +  RPDT+ + L   Y  CP+     ++
Sbjct: 142 YSLYTAVITRPDTKFIQLPPLYEMCPYFFFNSEV 175


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 507 GIVGPSPIP 481
           G+VGP P+P
Sbjct: 33  GVVGPKPVP 41


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 346 YLAEKYGGKWTLGI-GLLSTAIFTLMT 423
           Y+  + G K TLGI  LLS  +F LMT
Sbjct: 236 YVPSESGEKVTLGISALLSMTVF-LMT 261


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 352 AEKYGGKWTLGIGLLSTAIFTLMTP 426
           A KY G  TL I   S  +  ++TP
Sbjct: 107 ANKYCGNITLNIESTSNKMTVILTP 131


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,737
Number of Sequences: 438
Number of extensions: 4208
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)