Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17c08
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    28   1.2  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    26   3.6  
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce...    25   6.2  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   8.3  

>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = -1

Query: 362 CSRYIEWTLHPRSWWQNTLLLHLLPQFMWWIRRVVFIKIW 243
           C ++ E+     S ++ +    L PQFM+++RR  F++++
Sbjct: 548 CQKFAEYRKDDPSSFRLSSQFTLYPQFMYYLRRSPFLQVF 587


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 430 REVDTIEALPSPSGGTYASKTPPVADI*NGRSIHGLGGK 314
           R+ +     P PSG   AS+  PV+ + +  + HGL G+
Sbjct: 71  RQCEGYTHFPRPSGTFTASRRIPVSSLLSEPAPHGLAGQ 109


>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 171 TTTTKHHNPKFKKERAQKFLKIDLPDF 251
           T   KHH   F+  RA K+++   P+F
Sbjct: 26  TLLDKHHRFHFRTYRAMKYIREKYPNF 52


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 342 PFYISATGGVFEAYVPPEG 398
           PFY +A GG  ++Y+ P+G
Sbjct: 572 PFYGNANGGGLKSYLVPKG 590


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,247
Number of Sequences: 5004
Number of extensions: 49149
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)