Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17c08
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0267 - 2828966-2829340,2831164-2831629,2833390-2833487,283...    29   2.8  
03_06_0470 + 34164873-34165856,34166335-34166568,34166680-341670...    29   2.8  
10_08_0854 + 21086253-21086258,21086320-21086480,21087065-210871...    27   8.5  

>10_01_0267 -
           2828966-2829340,2831164-2831629,2833390-2833487,
           2833782-2834078,2834287-2834694
          Length = 547

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +3

Query: 273 PPHKLRQKMKEKGVLPPRPWMERPFYISATGGVFEAYVP 389
           PPH     +   G + P P    P + S   G+F A VP
Sbjct: 483 PPHPAAAALSPPGAIAPAPASMLPPFNSTAAGIFAAPVP 521


>03_06_0470 +
           34164873-34165856,34166335-34166568,34166680-34167006,
           34168426-34168716
          Length = 611

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 287 QFMWWIRRVVFIKIWKVYLKEFLSTFLFK 201
           QF+W I R +    +  +LK ++STF FK
Sbjct: 398 QFLWRIERQIGRPAFDEFLKNYISTFKFK 426


>10_08_0854 +
           21086253-21086258,21086320-21086480,21087065-21087175,
           21087275-21087329,21087796-21087963,21088232-21090082,
           21090355-21090690
          Length = 895

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 21/69 (30%), Positives = 33/69 (47%)
 Frame = +3

Query: 342 PFYISATGGVFEAYVPPEGDGKASIVSTSRAKQTVELLEKKSKSMMAIRKIKSFDEDYDS 521
           P  +S   GVF+A  PPE    A+  + +R+    ++L+   KS  ++R   S  E  D+
Sbjct: 409 PKSLSTKVGVFDATCPPESTHGANSTTKARSSPFKKILDPIMKS-KSLRN-PSLMEKEDA 466

Query: 522 KKIHLTCSG 548
           K   L   G
Sbjct: 467 KHSSLLVEG 475


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,407,880
Number of Sequences: 37544
Number of extensions: 319576
Number of successful extensions: 862
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)