Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17c08
         (590 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC130384-1|AAI30385.1|  306|Homo sapiens mitochondrial ribosomal...    60   6e-09
BC130382-1|AAI30383.1|  306|Homo sapiens mitochondrial ribosomal...    60   6e-09
AK172741-1|BAD18730.1|  306|Homo sapiens protein ( Homo sapiens ...    60   6e-09
D50928-1|BAA09487.2|  962|Homo sapiens KIAA0138 protein.               29   9.3  
AC004611-1|AAC14666.1|  953|Homo sapiens KIAA0138 protein.             29   9.3  

>BC130384-1|AAI30385.1|  306|Homo sapiens mitochondrial ribosomal
           protein L45 protein.
          Length = 306

 Score = 60.1 bits (139), Expect = 6e-09
 Identities = 26/78 (33%), Positives = 47/78 (60%)
 Frame = +3

Query: 291 QKMKEKGVLPPRPWMERPFYISATGGVFEAYVPPEGDGKASIVSTSRAKQTVELLEKKSK 470
           Q  ++ G++ P    +R  +++ T G+F+AYVPPEGD + S +S     +  E ++K   
Sbjct: 58  QHARKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMA 117

Query: 471 SMMAIRKIKSFDEDYDSK 524
           S ++IR+IK +D ++  K
Sbjct: 118 SQVSIRRIKDYDANFKIK 135


>BC130382-1|AAI30383.1|  306|Homo sapiens mitochondrial ribosomal
           protein L45 protein.
          Length = 306

 Score = 60.1 bits (139), Expect = 6e-09
 Identities = 26/78 (33%), Positives = 47/78 (60%)
 Frame = +3

Query: 291 QKMKEKGVLPPRPWMERPFYISATGGVFEAYVPPEGDGKASIVSTSRAKQTVELLEKKSK 470
           Q  ++ G++ P    +R  +++ T G+F+AYVPPEGD + S +S     +  E ++K   
Sbjct: 58  QHARKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMA 117

Query: 471 SMMAIRKIKSFDEDYDSK 524
           S ++IR+IK +D ++  K
Sbjct: 118 SQVSIRRIKDYDANFKIK 135


>AK172741-1|BAD18730.1|  306|Homo sapiens protein ( Homo sapiens
           cDNA FLJ23902 fis, clone ADKA01604. ).
          Length = 306

 Score = 60.1 bits (139), Expect = 6e-09
 Identities = 26/78 (33%), Positives = 47/78 (60%)
 Frame = +3

Query: 291 QKMKEKGVLPPRPWMERPFYISATGGVFEAYVPPEGDGKASIVSTSRAKQTVELLEKKSK 470
           Q  ++ G++ P    +R  +++ T G+F+AYVPPEGD + S +S     +  E ++K   
Sbjct: 58  QHARKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMA 117

Query: 471 SMMAIRKIKSFDEDYDSK 524
           S ++IR+IK +D ++  K
Sbjct: 118 SQVSIRRIKDYDANFKIK 135


>D50928-1|BAA09487.2|  962|Homo sapiens KIAA0138 protein.
          Length = 962

 Score = 29.5 bits (63), Expect = 9.3
 Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
 Frame = +3

Query: 159 QQSRTTTTKHHNPKFKKERAQKFLKIDLPDFNEDHTSYPPHKLRQKMKEKGVLPPRPWME 338
           ++  ++  +HH+ + K E+      I   +  E      P  ++++ K++  L P P   
Sbjct: 511 KEKLSSVDRHHSVEIKIEKTV----IKKEEKIEKKEEKKPEDIKKEEKDQDELKPGPTNR 566

Query: 339 RPFYISATGGVFEAYVPPEGDGKA--SIVSTSRAKQTVELLEKKSKSMMAIRKIKSFDE 509
                S + G+    V  +  G+   S+ +TSR+K+     + +       R I SFD+
Sbjct: 567 SRVTKSGSRGMERTVVMDKSKGEPVISVKTTSRSKERSSKSQDRKSESKEKRDILSFDK 625


>AC004611-1|AAC14666.1|  953|Homo sapiens KIAA0138 protein.
          Length = 953

 Score = 29.5 bits (63), Expect = 9.3
 Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
 Frame = +3

Query: 159 QQSRTTTTKHHNPKFKKERAQKFLKIDLPDFNEDHTSYPPHKLRQKMKEKGVLPPRPWME 338
           ++  ++  +HH+ + K E+      I   +  E      P  ++++ K++  L P P   
Sbjct: 502 KEKLSSVDRHHSVEIKIEKTV----IKKEEKIEKKEEKKPEDIKKEEKDQDELKPGPTNR 557

Query: 339 RPFYISATGGVFEAYVPPEGDGKA--SIVSTSRAKQTVELLEKKSKSMMAIRKIKSFDE 509
                S + G+    V  +  G+   S+ +TSR+K+     + +       R I SFD+
Sbjct: 558 SRVTKSGSRGMERTVVMDKSKGEPVISVKTTSRSKERSSKSQDRKSESKEKRDILSFDK 616


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,754,680
Number of Sequences: 237096
Number of extensions: 1716657
Number of successful extensions: 3519
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3519
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6211568660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)