Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17c07
         (305 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    29   0.15 
SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   4.4  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    24   5.8  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    24   5.8  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    23   7.7  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    23   7.7  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    23   7.7  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    23   7.7  

>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 29.1 bits (62), Expect = 0.15
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 8   CEVEYVRRNRLLFTQKGISLKSALLVGVHRKFEI 109
           CE +Y RR  LL    G++L+   +  +++KF I
Sbjct: 168 CETDYFRRLDLLCASCGMALRGYYITALNKKFHI 201


>SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 149

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 142 SMRKLNFLLPCYLEFSMNA 86
           S R L  L+PC++EF++ +
Sbjct: 37  SKRALYMLIPCFMEFAVGS 55


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 2   IHCEVEYVRRNRLLFTQKGISLK 70
           +HC V YVRR++  +   G+S K
Sbjct: 456 MHCGVSYVRRHQSGYGVVGVSNK 478


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 127 NFLLPCYLEFSMNAY**STFKRYA 56
           ++L+ CY E + +A   +TF RYA
Sbjct: 468 SYLVDCYHEMAASALSVATFTRYA 491


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 231 HIRIFLLHQVVVRHRYNY 178
           H R F LH+VVV   Y+Y
Sbjct: 89  HDRSFALHKVVVPDDYDY 106


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 190 VPNNYLVKEEDSDMILDVASPSPSRKRRLDHLTWEEK 300
           +PN  L+++  S+  L   +P PS  R    L  +E+
Sbjct: 80  LPNQQLLQQLQSNGALQQGTPEPSNTRPRPQLNAQEQ 116


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -3

Query: 90  TPTNRALLSDMPFCVNNKRLRRTY 19
           TP   AL SD+ FCV N    R Y
Sbjct: 129 TPVEVALASDIYFCVLNGAPVREY 152


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = +1

Query: 139 LIEWSDYEKMSAPI 180
           LI+++D+EKMS P+
Sbjct: 218 LIKFADFEKMSPPV 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,238,128
Number of Sequences: 5004
Number of extensions: 21570
Number of successful extensions: 45
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)