Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17c07
         (305 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-1|CAA91262.2|  320|Caenorhabditis elegans Hypothetical pr...    28   1.5  
U41105-6|AAA82400.1|  107|Caenorhabditis elegans Msh (muts homol...    28   1.5  
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a...    27   2.6  
Z77667-6|CAB01235.2|  870|Caenorhabditis elegans Hypothetical pr...    26   4.5  
U10438-10|AAA19088.2|  345|Caenorhabditis elegans Hypothetical p...    26   4.5  
AF416567-1|AAL27004.1|  870|Caenorhabditis elegans nuclear zinc ...    26   4.5  
AF125462-6|AAD12857.2|  239|Caenorhabditis elegans Hypothetical ...    26   6.0  
Z70684-6|CAA94595.1|  230|Caenorhabditis elegans Hypothetical pr...    25   7.9  

>Z66494-1|CAA91262.2|  320|Caenorhabditis elegans Hypothetical
           protein C34C6.1 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 228 IRIFLLHQVVVRHRYNYRGTHFFVITPLN 142
           + +F+LH ++V  R  ++G+ FF I  L+
Sbjct: 39  LHLFILHTILVTRRGYFKGSSFFAIFALD 67


>U41105-6|AAA82400.1|  107|Caenorhabditis elegans Msh (muts homolog)
           family protein 4 protein.
          Length = 107

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 216 LLHQVVVRHRYNYRGTHFFVITPLNQ*ENSISYYH 112
           +  +V+  H Y +  THF  I  L    N+I  YH
Sbjct: 55  ICEKVLKLHSYTFLATHFLDIAALANYSNAIDNYH 89


>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 168 protein.
          Length = 1347

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 190 VPNNYLVKEEDSDMILDVASPSPSRKRRL 276
           VP+NY+ +  DS ++ +  +PSPS   R+
Sbjct: 96  VPSNYVERVPDSVLLANARAPSPSFPLRI 124


>Z77667-6|CAB01235.2|  870|Caenorhabditis elegans Hypothetical
           protein M04B2.1 protein.
          Length = 870

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 7/22 (31%), Positives = 18/22 (81%)
 Frame = +1

Query: 214 EEDSDMILDVASPSPSRKRRLD 279
           ++D D I ++++P+P++K ++D
Sbjct: 207 DDDDDEIQEISTPAPAKKAKID 228


>U10438-10|AAA19088.2|  345|Caenorhabditis elegans Hypothetical
           protein B0280.10 protein.
          Length = 345

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 139 LIEWSDYEKMSAPIIITVPNNYLVKEEDSDMILDVASPSPSRKR 270
           LI WS   K+  P+II+   ++   +EDS+ +  +     SR++
Sbjct: 92  LIAWSQSGKVDNPVIIS-SRSWTKSDEDSERLQTLRKLGKSRRK 134


>AF416567-1|AAL27004.1|  870|Caenorhabditis elegans nuclear zinc
           finger protein protein.
          Length = 870

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 7/22 (31%), Positives = 18/22 (81%)
 Frame = +1

Query: 214 EEDSDMILDVASPSPSRKRRLD 279
           ++D D I ++++P+P++K ++D
Sbjct: 207 DDDDDEIQEISTPAPAKKAKID 228


>AF125462-6|AAD12857.2|  239|Caenorhabditis elegans Hypothetical
           protein Y66H1A.2 protein.
          Length = 239

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 133 FSLIEWSDYEKMSAPIIITVPNNYLVKEEDSDMILDVASP 252
           +S+I  +  EK + PI I +  NYL +     +I+D ASP
Sbjct: 7   YSIILPTYNEKENLPICIWLIENYLKEVSHEVIIVDDASP 46


>Z70684-6|CAA94595.1|  230|Caenorhabditis elegans Hypothetical
           protein F28D1.6 protein.
          Length = 230

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +1

Query: 151 SDYEKMSAPIIITVPNN---YLVKEEDSDMILDVASPSPSRK 267
           SD      P + T P++   +L  E+D D  + V +P+PS++
Sbjct: 143 SDGTTPEPPQVFTKPSSMWDFLGDEDDDDTTVKVTTPAPSKE 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,816,052
Number of Sequences: 27780
Number of extensions: 118643
Number of successful extensions: 237
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)