Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17c07
         (305 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   0.64 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   3.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   3.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   3.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   4.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   6.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   6.0  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.4 bits (48), Expect = 0.64
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -3

Query: 186 YNYRGTHFFVITPLNQ*ENSISYYHAISNFL*TPTNRALLSDMPFCVNNK 37
           ++Y+G  +F + P N+  NS+ Y   +     T  N A+    P   N K
Sbjct: 194 WDYKGIVYFELLPPNRTINSVVYIEQL-----TKLNNAVEEKRPELTNRK 238


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 108 ISNFL*TPTNRALLSDMPFCV 46
           + N L    NRA L+D  FC+
Sbjct: 725 LKNVLLDIENRAKLTDFGFCI 745


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 108 ISNFL*TPTNRALLSDMPFCV 46
           + N L    NRA L+D  FC+
Sbjct: 763 LKNVLLDIENRAKLTDFGFCI 783


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 201 VVRHRYNYRGTHFFV 157
           VVR RY +  T++FV
Sbjct: 70  VVRERYLHTATNYFV 84


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 5/26 (19%), Positives = 16/26 (61%)
 Frame = -2

Query: 169 SFFRNHSTQSMRKLNFLLPCYLEFSM 92
           + +RN + +   +++ ++ C +EF +
Sbjct: 97  TLYRNKTVKYSARMHAIIACQMEFQL 122


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 184 ITVPNNYLVKEEDSDMI 234
           ITVPN  L   +D D++
Sbjct: 135 ITVPNKLLRISQDGDIL 151


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 12   RLNMYDAIVCYS 47
            R  +YD  VCYS
Sbjct: 1062 RERLYDCYVCYS 1073


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,427
Number of Sequences: 438
Number of extensions: 1527
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)