Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17c06
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   8.3  
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    25   8.3  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    25   8.3  

>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = +1

Query: 13  NGSQCWLSPLSSS*LTQKMQRPRRNPRRFWKPS 111
           NG++ W+ P++++        PR  P+  ++P+
Sbjct: 662 NGNRDWVQPVNTTSSVSAFASPRIKPKLLFQPN 694


>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +3

Query: 255 SLATVMAARTYAGQLDRGLGEENILEFEKFPVTGLARTYCLDAQVPDSACTATSYLT 425
           SL+TV+       +L+     + +LE E+F VT       L ++VP         LT
Sbjct: 147 SLSTVLERMADCFKLNNKKNSQKLLEDEEFAVTEALMKSLLKSRVPSKPTEELYQLT 203


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 254 HSIANKKNSVSGLIFVGLL 198
           +SI N KNS+SGL  + +L
Sbjct: 338 YSILNSKNSISGLSVIDVL 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,106,935
Number of Sequences: 5004
Number of extensions: 43763
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)