Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17c06
         (495 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46242-5|CAA86330.2|  364|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U19861-1|AAA97554.2|  364|Caenorhabditis elegans mab-21 protein ...    30   1.1  
Z82260-10|CAB05138.1|  361|Caenorhabditis elegans Hypothetical p...    27   7.5  
U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AL021471-2|CAA16296.2|  240|Caenorhabditis elegans Hypothetical ...    27   7.5  
U88314-7|AAF99887.2|  294|Caenorhabditis elegans Pharyngeal glan...    27   9.9  

>Z46242-5|CAA86330.2|  364|Caenorhabditis elegans Hypothetical
           protein F35G12.6 protein.
          Length = 364

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 481 DPRVTFPSKPITPYLVFTPVRYEVAVHAESGTW 383
           D  + FP  P+T Y++ T V YE   H     W
Sbjct: 264 DAHMDFPGTPVTNYILKTLVLYECEKHCSEYEW 296


>U19861-1|AAA97554.2|  364|Caenorhabditis elegans mab-21 protein
           protein.
          Length = 364

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 481 DPRVTFPSKPITPYLVFTPVRYEVAVHAESGTW 383
           D  + FP  P+T Y++ T V YE   H     W
Sbjct: 264 DAHMDFPGTPVTNYILKTLVLYECEKHCSEYEW 296


>Z82260-10|CAB05138.1|  361|Caenorhabditis elegans Hypothetical
           protein C32H11.12 protein.
          Length = 361

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 312 GEENILEFEKFPVTGLARTYCLDAQVPDSACTAT 413
           G E I  F+ FP TG+   Y  +  V ++ C AT
Sbjct: 285 GPETIKSFDSFPDTGVLNVY--ENNVSNTTCIAT 316


>U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical
           protein F10E7.4 protein.
          Length = 819

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 293 AGISPGCHDSGQRHSIANKKNSV 225
           A ISPGC  SG  H+    K SV
Sbjct: 112 ARISPGCRQSGVSHANLKSKTSV 134


>AL021471-2|CAA16296.2|  240|Caenorhabditis elegans Hypothetical
           protein Y17D7C.2 protein.
          Length = 240

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -2

Query: 284 SPG-CHDSGQRHSIANKKNSVS 222
           SPG C DS Q+H + +KK+ +S
Sbjct: 201 SPGDCSDSKQKHPLGSKKSKIS 222


>U88314-7|AAF99887.2|  294|Caenorhabditis elegans Pharyngeal gland
           toxin-relatedprotein 1 protein.
          Length = 294

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +3

Query: 348 VTGLARTYCLDAQVPD---SACTATSYLTGVKTKYGVIGLDGNVTRGSCHS 491
           VT  + T C D   P    S C+A +YL    T Y V+      T G C+S
Sbjct: 80  VTSTSTTTCADRVNPSTGVSDCSALAYLCNDSTYYTVMTQQCPRTCGRCNS 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,810,801
Number of Sequences: 27780
Number of extensions: 253716
Number of successful extensions: 671
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)