Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17c06
         (495 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        26   0.25 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   1.0  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   2.4  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   9.5  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 121 AGFMTVSRTFLGFGVVAASSASVRTRTTAKASTA 20
           A F   S    GFG  AASSA++       A+TA
Sbjct: 110 AAFGATSSMVPGFGSTAASSAALAAAAAVDAATA 143


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 242 WRWNVVGHCHGSPDLCR 292
           W W+ VG+C G   + R
Sbjct: 234 WEWHTVGNCDGLTSVFR 250


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
 Frame = +3

Query: 345 PVTGLART---YCLDAQVPDSACTATSYLTGVKTKYGVIGLDGNVT 473
           P TG+  T   YC+D +VP S    + Y  G      + G+    T
Sbjct: 314 PGTGINVTLKGYCIDMEVPYSGTLISHYEDGETKSRFISGIRSEQT 359


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +2

Query: 242 WRWNVVGHCHGSPDLCRPTGSRAGR 316
           W +N V +C G   + R    + GR
Sbjct: 109 WSYNDVKYCDGLTSVYRMQVDKCGR 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,629
Number of Sequences: 438
Number of extensions: 3463
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)