Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17b24
(452 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.047
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 31 0.083
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 1.0
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 27 1.8
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 1.8
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 1.8
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 5.4
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 25 7.2
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 25 7.2
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 24 9.5
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc... 24 9.5
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.9 bits (69), Expect = 0.047
Identities = 29/117 (24%), Positives = 54/117 (46%)
Frame = +1
Query: 97 IPTSLTTFWRSSFTIASSLPITTVRLKRASIYTRRRRAKSSQM**TN*YETTR*TAWSTP 276
+P + T S++TI+SS P+T+ + + T +S + TT T ST
Sbjct: 502 VPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTT-STS 560
Query: 277 INFGSRAPRTSSVIVSQLSSDLSSPKTPLSLCTSATVSL*R*VMMFTATMADLPSAT 447
+ + S +S+ +S + S+P T + TS +V ++T+T P++T
Sbjct: 561 VPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSV-------LYTSTPITSPNST 610
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 31.1 bits (67), Expect = 0.083
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +3
Query: 120 LEEQLYNSIVVADYDSAVE--KSKH--LYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 287
L E + V D +S E K KH + + +KS + ++ K+++ NK+N +E A Q W
Sbjct: 110 LAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNW 169
Query: 288 LQGSKD 305
+ K+
Sbjct: 170 SKYIKE 175
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 1.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 129 QLYNSIVVADYDSAVEKSKHLYEEKKS 209
QL N DY+ E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 26.6 bits (56), Expect = 1.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 201 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 293
K+ +T+ NKL+ ++ + +YAY L LQ
Sbjct: 35 KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 1.8
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = +1
Query: 97 IPTSLTTFWRSSFTIASSLPITTVRLKRA-SIYTRRRRAKSSQM**TN*YETTR*TAWST 273
+PTS TF S F S LP ++ + S SS T+ T+ + ST
Sbjct: 677 VPTS--TFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTS---SVST 731
Query: 274 PINFGSRAPRTSSVIVSQLSSDLSSPKTP 360
P++ S P + S S+LSS L+S P
Sbjct: 732 PLSNSSAYPSSGSSTFSRLSSTLTSSIIP 760
Score = 25.8 bits (54), Expect = 3.1
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Frame = +1
Query: 103 TSLTTFWRSSFTIASSLPITTVRLKRASIYTRRRRAKSSQM**TN*YETTR*TAWSTPIN 282
T LT+ ++ T ASS P+T+V A+ A S+ + N +T ++ + N
Sbjct: 357 TPLTSVNSTTATSASSTPLTSVNSTSAT------SASSTPLTSANSTTSTSVSSTAPSYN 410
Query: 283 FGSRAPRTSSVIVSQLSS-----DLSSPKTPLSLCTSATVS 390
S P TSSV + LSS S+ TPLS S T +
Sbjct: 411 TSSVLP-TSSVSSTPLSSANSTTATSASSTPLSSVNSTTAT 450
Score = 24.6 bits (51), Expect = 7.2
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Frame = +1
Query: 103 TSLTTFWRSSFTIASSLPITTVRLKRASIYTRRRRAKSSQM**TN*YETTR*TAWSTPIN 282
T LT+ ++ T ASS P+T+V A+ A S+ + N +T ++ + N
Sbjct: 471 TPLTSVNSTTATSASSTPLTSVNSTSAT------SASSTPLTSANSTTSTSVSSTAPSYN 524
Query: 283 FGSRAPRTSSVIVSQLSS-----DLSSPKTPLSLCTSATVS 390
S P TSSV + LSS S+ TPL+ S T +
Sbjct: 525 TSSVLP-TSSVSSTPLSSANSTTATSASSTPLTSVNSTTAT 564
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.6 bits (56), Expect = 1.8
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 289 SRAPRTSSVIVSQLSSDLSSP-KTPLSLCTSATVS 390
S P T S + S LSS SSP T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.0 bits (52), Expect = 5.4
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 389 ETVALVHKLNGVFGEDKSELNWETITDDVLGALEPKL 279
E V +H L+ F ED+ E E I DV A++PKL
Sbjct: 2004 ELVTTLHSLDVFFAEDRDE---ELIQPDV--AVDPKL 2035
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 24.6 bits (51), Expect = 7.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 374 VHKLNGVFGEDKSELNWETITDDVL 300
+H + EDKS+L +ETI D VL
Sbjct: 9 IHPVRHSKYEDKSKLPFETIPDPVL 33
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 24.6 bits (51), Expect = 7.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 375 KRDGLALTLSNDVHGNDGRLAFGD 446
K++G+ + ND GN+G A+ D
Sbjct: 364 KKEGITSSNKNDDSGNEGSSAYSD 387
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 24.2 bits (50), Expect = 9.5
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 259 TAWSTPINFGSRAPRTSSVIVSQLSSDLSSPKTPLSLCTSATVS 390
T T F TSSV + S + TP+SL +S+T S
Sbjct: 245 TVSPTESTFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTSS 288
Score = 24.2 bits (50), Expect = 9.5
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Frame = +1
Query: 97 IPTSLTTFWRSSFTIASSLPIT-TVRLKRASIYTRRRRAKSSQM-----**TN*YETTR* 258
+P + F S + ASSLPIT + L ++++ + ++SSQ T Y T+
Sbjct: 463 VPLTSNNFSSISHSSASSLPITPSSYLSNTTLHSSVQSSQSSQFTVSVPSSTQSYSTS-- 520
Query: 259 TAWSTPINFG---SRAPRT---SSVIVSQLSSDLSSPKTPLSLCTSATVS 390
+ ++TPI S P T SS S LSS++++ S +S+ S
Sbjct: 521 SNFTTPITISTSLSSFPTTIVSSSFQYSSLSSNVTTTNAQSSSLSSSNSS 570
>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 24.2 bits (50), Expect = 9.5
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 120 LEEQLYNSIVVADYDSAVEKSKHLYEE-KKSEVITNVVNKLIRNNKMN 260
LE L + +VA S++EKSK LY+ K ++ +VV R ++MN
Sbjct: 279 LEYMLEHGGLVALEASSIEKSKLLYDTLDKHDLYISVVEPAAR-SRMN 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,677,296
Number of Sequences: 5004
Number of extensions: 30224
Number of successful extensions: 135
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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