Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17b24
         (452 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF160911-1|AAD46851.1| 1028|Drosophila melanogaster BcDNA.LD0556...    28   6.8  
AE014296-1819|AAF50157.1| 1028|Drosophila melanogaster CG6539-PA...    28   6.8  
AE013599-2124|AAM70966.1| 1469|Drosophila melanogaster CG8355-PB...    28   6.8  
BT021271-1|AAX33419.1|  842|Drosophila melanogaster RE46655p pro...    27   8.9  
BT012304-1|AAS77429.1|  243|Drosophila melanogaster LP23088p pro...    27   8.9  
AE014298-1511|AAF47963.1|  243|Drosophila melanogaster CG17333-P...    27   8.9  
AE014134-2788|AAF53573.1|  842|Drosophila melanogaster CG13272-P...    27   8.9  

>AF160911-1|AAD46851.1| 1028|Drosophila melanogaster BcDNA.LD05563
           protein.
          Length = 1028

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 120 LEEQLYNSIVVADYDSAVEKSKHLYEEKKSEV 215
           L ++LY SI+   Y+SA E+ KH  E  K  +
Sbjct: 795 LLDKLYKSILEMYYNSAKERKKHFKEAMKESL 826


>AE014296-1819|AAF50157.1| 1028|Drosophila melanogaster CG6539-PA
           protein.
          Length = 1028

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 120 LEEQLYNSIVVADYDSAVEKSKHLYEEKKSEV 215
           L ++LY SI+   Y+SA E+ KH  E  K  +
Sbjct: 795 LLDKLYKSILEMYYNSAKERKKHFKEAMKESL 826


>AE013599-2124|AAM70966.1| 1469|Drosophila melanogaster CG8355-PB,
            isoform B protein.
          Length = 1469

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = -3

Query: 198  PRINACS-FQPHCRNRQRRCYCKAAPPECR*GRRNLQHTEMPRKDIE*L*RASSSERC-N 25
            P  NA   +Q  C++ QR  YC  A   CR  +    +TE   +  + L  A     C N
Sbjct: 1370 PNSNARDGYQCKCKHGQRGRYCDQAASTCRKEQVREYYTENDCRSRQPLKYAKCVGGCGN 1429

Query: 24   LCCTSTI 4
             CC + I
Sbjct: 1430 QCCAAKI 1436


>BT021271-1|AAX33419.1|  842|Drosophila melanogaster RE46655p
           protein.
          Length = 842

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 209 RSHHKCSEQTDTKQQDELHGVRLSTLAPGLQGHRP 313
           + HH+  +Q   +QQ +   +R S  AP  Q H P
Sbjct: 165 QQHHQQQQQQQHQQQAKYAAIRRSYYAPTQQQHNP 199


>BT012304-1|AAS77429.1|  243|Drosophila melanogaster LP23088p
           protein.
          Length = 243

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = +2

Query: 176 KEQAFIRGEEERSHHKCSEQTDTKQQDELHGVRLSTLAPGLQGHRP*LFPS*VQTYLRRK 355
           +E  F+R +  +    C+   + K + ++    L  L  G  GH   LFP    T    K
Sbjct: 102 QESQFVRADTSQPLDACAADYEAKVKSQVDRFDLLLLGMGPDGHTCSLFPEQPATLQETK 161

Query: 356 R 358
           R
Sbjct: 162 R 162


>AE014298-1511|AAF47963.1|  243|Drosophila melanogaster CG17333-PA
           protein.
          Length = 243

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = +2

Query: 176 KEQAFIRGEEERSHHKCSEQTDTKQQDELHGVRLSTLAPGLQGHRP*LFPS*VQTYLRRK 355
           +E  F+R +  +    C+   + K + ++    L  L  G  GH   LFP    T    K
Sbjct: 102 QESQFVRADTSQPLDACAADYEAKVKSQVDRFDLLLLGMGPDGHTCSLFPEQPATLQETK 161

Query: 356 R 358
           R
Sbjct: 162 R 162


>AE014134-2788|AAF53573.1|  842|Drosophila melanogaster CG13272-PA
           protein.
          Length = 842

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 209 RSHHKCSEQTDTKQQDELHGVRLSTLAPGLQGHRP 313
           + HH+  +Q   +QQ +   +R S  AP  Q H P
Sbjct: 165 QQHHQQQQQQQHQQQAKYAAIRRSYYAPTQQQHNP 199


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,384,628
Number of Sequences: 53049
Number of extensions: 341347
Number of successful extensions: 1434
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1476622287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)