Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17b24
(452 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46934-11|CAE18043.1| 497|Caenorhabditis elegans Hypothetical p... 30 0.69
Z46934-10|CAD18882.1| 495|Caenorhabditis elegans Hypothetical p... 30 0.69
Z81507-1|CAB04133.1| 485|Caenorhabditis elegans Hypothetical pr... 30 0.91
AF036698-2|AAB88353.1| 485|Caenorhabditis elegans Puf (pumilio/... 30 0.91
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 29 1.6
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 29 1.6
L12018-1|AAA65458.1| 518|Caenorhabditis elegans Polk (dna polym... 28 3.7
Z81083-2|CAB03101.3| 646|Caenorhabditis elegans Hypothetical pr... 27 4.8
Z74034-4|CAE17842.2| 319|Caenorhabditis elegans Hypothetical pr... 27 4.8
U39744-3|AAK18884.2| 563|Caenorhabditis elegans Hypothetical pr... 27 6.4
AL117202-30|CAO82060.1| 449|Caenorhabditis elegans Hypothetical... 27 6.4
AL117202-29|CAO82059.1| 842|Caenorhabditis elegans Hypothetical... 27 6.4
AL117202-15|CAC42376.1| 627|Caenorhabditis elegans Hypothetical... 27 6.4
AL117202-14|CAB57894.2| 766|Caenorhabditis elegans Hypothetical... 27 6.4
AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical ... 27 8.4
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 27 8.4
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 27 8.4
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ... 27 8.4
>Z46934-11|CAE18043.1| 497|Caenorhabditis elegans Hypothetical
protein ZK1320.12b protein.
Length = 497
Score = 30.3 bits (65), Expect = 0.69
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 156 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 266
D D + EK + +KK IT++VN +IRN C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241
>Z46934-10|CAD18882.1| 495|Caenorhabditis elegans Hypothetical
protein ZK1320.12a protein.
Length = 495
Score = 30.3 bits (65), Expect = 0.69
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 156 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 266
D D + EK + +KK IT++VN +IRN C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241
>Z81507-1|CAB04133.1| 485|Caenorhabditis elegans Hypothetical
protein F18A11.1 protein.
Length = 485
Score = 29.9 bits (64), Expect = 0.91
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +3
Query: 213 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 389
++ V+++L N K+ C ++ QL IVR+C+ + FA I+ + K G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314
>AF036698-2|AAB88353.1| 485|Caenorhabditis elegans Puf
(pumilio/fbf) domain-containingprotein 7 protein.
Length = 485
Score = 29.9 bits (64), Expect = 0.91
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +3
Query: 213 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 389
++ V+++L N K+ C ++ QL IVR+C+ + FA I+ + K G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 29.1 bits (62), Expect = 1.6
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Frame = +3
Query: 36 PKMKPVIVILCLFVASLYAADSD-VPNDILEEQLY--NSIVVADYDSAVEKSKH-LYEEK 203
P +K V+V LC+ +LY + S + + EQLY +S+ A + ++ + + EE
Sbjct: 922 PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981
Query: 204 KSEVITNVVNKLIRNNKMNCMEYAY 278
+ E N++N + C+E AY
Sbjct: 982 EPETYHNILN--VMPEGQACLEKAY 1004
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 29.1 bits (62), Expect = 1.6
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Frame = +3
Query: 36 PKMKPVIVILCLFVASLYAADSD-VPNDILEEQLY--NSIVVADYDSAVEKSKH-LYEEK 203
P +K V+V LC+ +LY + S + + EQLY +S+ A + ++ + + EE
Sbjct: 922 PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981
Query: 204 KSEVITNVVNKLIRNNKMNCMEYAY 278
+ E N++N + C+E AY
Sbjct: 982 EPETYHNILN--VMPEGQACLEKAY 1004
>L12018-1|AAA65458.1| 518|Caenorhabditis elegans Polk (dna
polymerase kappa) homologprotein 1 protein.
Length = 518
Score = 27.9 bits (59), Expect = 3.7
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 153 ADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNN--KMNCMEYAYQLWLQGSKDIVRDCFP 326
A Y S +K + EEK E I N + R K + ++ L+ S+D+ RDC
Sbjct: 29 ASYSSFSKKQQSRIEEKVLE-IKNRLQTATREERQKSEILMENLEMKLESSRDLSRDCVC 87
Query: 327 VEFRLIFA 350
++ FA
Sbjct: 88 IDMDAYFA 95
>Z81083-2|CAB03101.3| 646|Caenorhabditis elegans Hypothetical
protein F44F1.3 protein.
Length = 646
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 374 VHKLNGVFGEDKSELNWETITDDVLGA-LEP 285
VHK+NG+F ++K + E I D LEP
Sbjct: 419 VHKINGIFSDNKKVVACEIINDSTQDIDLEP 449
>Z74034-4|CAE17842.2| 319|Caenorhabditis elegans Hypothetical
protein F43A11.3 protein.
Length = 319
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +3
Query: 261 CMEYAYQLWL---QGSKDIVRDCFPVEFRLIFA 350
C+ Y Y+L + +KD+ RDCF F + FA
Sbjct: 139 CLFYVYRLTIVIYMTAKDVARDCFYSFFPITFA 171
>U39744-3|AAK18884.2| 563|Caenorhabditis elegans Hypothetical
protein C03F11.3 protein.
Length = 563
Score = 27.1 bits (57), Expect = 6.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 256 ILLFRISLFTTFVMTSLFFSSYK 188
I LF +S FTT + L FS YK
Sbjct: 206 ISLFNVSPFTTVTVDQLLFSGYK 228
>AL117202-30|CAO82060.1| 449|Caenorhabditis elegans Hypothetical
protein Y47D3A.17d protein.
Length = 449
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 380 ALVHKLNGVFGEDKSELNWETITD 309
AL+H+ G + E K + NWE D
Sbjct: 424 ALIHQFKGGYWEAKEQQNWEKCPD 447
>AL117202-29|CAO82059.1| 842|Caenorhabditis elegans Hypothetical
protein Y47D3A.17c protein.
Length = 842
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 380 ALVHKLNGVFGEDKSELNWETITD 309
AL+H+ G + E K + NWE D
Sbjct: 817 ALIHQFKGGYWEAKEQQNWEKCPD 840
>AL117202-15|CAC42376.1| 627|Caenorhabditis elegans Hypothetical
protein Y47D3A.17b protein.
Length = 627
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 380 ALVHKLNGVFGEDKSELNWETITD 309
AL+H+ G + E K + NWE D
Sbjct: 602 ALIHQFKGGYWEAKEQQNWEKCPD 625
>AL117202-14|CAB57894.2| 766|Caenorhabditis elegans Hypothetical
protein Y47D3A.17a protein.
Length = 766
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 380 ALVHKLNGVFGEDKSELNWETITD 309
AL+H+ G + E K + NWE D
Sbjct: 741 ALIHQFKGGYWEAKEQQNWEKCPD 764
>AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical
protein R06B10.1 protein.
Length = 1236
Score = 26.6 bits (56), Expect = 8.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 348 AENAIKLMYKRDGLALTLSNDVHGNDGRLAF 440
A N IK + + L+ +++NDV G DG+ +F
Sbjct: 171 ATNDIKAVETQIFLSASIANDVRGLDGKFSF 201
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 26.6 bits (56), Expect = 8.4
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = +2
Query: 185 AFIRGEEERSHHKCSEQT----DTKQQDELHGVRLSTLAPGLQGHRP 313
AFI EEE S K S QT T++ D V PG QG P
Sbjct: 154 AFIVFEEEESADKASSQTKQTFGTRECDVKKAVPQGKRFPGAQGRMP 200
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 26.6 bits (56), Expect = 8.4
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = +2
Query: 185 AFIRGEEERSHHKCSEQT----DTKQQDELHGVRLSTLAPGLQGHRP 313
AFI EEE S K S QT T++ D V PG QG P
Sbjct: 154 AFIVFEEEESADKASSQTKQTFGTRECDVKKAVPQGKRFPGAQGRMP 200
>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
protein H20J04.2 protein.
Length = 1427
Score = 26.6 bits (56), Expect = 8.4
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 63 LCLFVASLYAADSDVPNDILEEQLYNSIVVADYDSAVEKSKHLYEEKKSE 212
LC F + DV EE+L + VAD+ V++ K +E+ E
Sbjct: 382 LCFFFSEARRLGIDVGGLEQEEKLLSGKAVADFKQRVKEEKDAEKERAKE 431
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,418,153
Number of Sequences: 27780
Number of extensions: 175960
Number of successful extensions: 766
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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