Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17b23
(535 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 29 0.33
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom... 28 0.76
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 1.8
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 27 2.3
SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|... 26 4.1
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 5.4
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 25 7.1
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 25 7.1
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 7.1
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 9.4
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 29.5 bits (63), Expect = 0.33
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = +1
Query: 163 LKYVVFGALYYYRKYSSKNSAAGNDGRAGQGVKAIADPADMERAQPLSDHAKAFDAIFFI 342
+K +FG + K+ +++ A G+ A+ D+ERA +SD +A + FI
Sbjct: 393 VKEEIFGPVVAISKFKTEDEAIEKANNTTYGLAAMCFTKDLERAHRVSDELEA--GMVFI 450
Query: 343 SSKSEN 360
+S +EN
Sbjct: 451 NS-TEN 455
>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 28.3 bits (60), Expect = 0.76
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 151 KWYYL-KYVVFGALYYYRKYSSKNSAAGNDGRAGQGVKAIADPADMERAQPLSDHAKA 321
KW L K ++ Y K S+ +SA+GN + ++A AD+E +P + A A
Sbjct: 267 KWEALVKSPANNSVNVYAKDSNHSSASGNTKNKAKDWDSLAKLADLEEDEPTGEAALA 324
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 27.1 bits (57), Expect = 1.8
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = -3
Query: 419 PLHIPIGLCSQPLMMYTPFPFSLFDDIKNMASKALAWSLNG--CARSMSAGSAMALTPCP 246
P HIP+G S PL + S DDIK+ A SL A+S S ++ L P
Sbjct: 537 PSHIPLGTASLPL-KGNLYQISRSDDIKSGAPVLDTSSLVNPTLAKSASLNNSSLLNPSS 595
Query: 245 A--RPSLPAAEFLL 210
+ R +PA + +
Sbjct: 596 SLLRREVPAGKLTM 609
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 199 RKYSSKNSAAGNDGRAGQGVKAIADPADME 288
+ YS + N ++GQ + A+A+ AD+E
Sbjct: 208 KSYSENQKISKNKEKSGQSLAALAEEADLE 237
>SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 207
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 276 WIGYGLNALPGPTIITGSRI 217
WIG G+ LPG TI GS I
Sbjct: 158 WIGMGVIVLPGVTIGEGSVI 177
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -2
Query: 261 LNALPGPTIITGSRIL-T*ILSVIIKS 184
L+ LP P +ITG RI T ++ IIKS
Sbjct: 687 LDELPAPQVITGPRIQPTKLIDHIIKS 713
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 7.1
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -2
Query: 531 HLDPFSAELSYFSSKKDCVRYLLAAEKTFSWESDIKQSVAHSHRSLFAAA 382
HL F + Y S K LL A + + I +HS+ S F A+
Sbjct: 67 HLQNFQDQFDYSSVLKTPFNPLLEANSAYFLSNQISLPDSHSYASSFDAS 116
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.0 bits (52), Expect = 7.1
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -2
Query: 261 LNALPGPTIITGSRILT*ILSVIIKS 184
L L GPT+ T +ILT I+SV I S
Sbjct: 908 LEGLSGPTLGTFFQILTNIISVTILS 933
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 449 PFPGSPI*NSPLHIPIGLCSQPLMMYTPFP 360
PFP S + PLH P+ + QP++ P P
Sbjct: 132 PFPHSH--HPPLHNPLPVSCQPVLRPPPVP 159
>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 305 ATMLRLSMPYSLYHRKVKTERAY 373
A+M+RLSMPY L ER Y
Sbjct: 345 ASMIRLSMPYILCELADHPERFY 367
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,130,847
Number of Sequences: 5004
Number of extensions: 43587
Number of successful extensions: 125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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